NONHSAT078543
Revision as of 23:53, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078543 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1767 nt |
Genomic location |
chr20-:7282703..7288079 |
Exon number |
3 |
Exons |
7282703..7282711,7282736..7284398,7288006..7288079 |
Genome context |
|
Sequence |
000001 CGGGTGATCC TGGATCGTCA AGCCATGTTG ATGTTGATTG GATGTCAGGA GCAGACGATG TCCAGCACTA ACAGAATGAA 000080
000081 TCTACCAGGA GCACAGACTT TGGGATCACC ATTGTGTCTG TTTTAAGTGT GCGTGTGTGT GTGTGCACGT GCGCATGCGT 000160 000161 GCGTGTGTCT TCCATTTTGA AACAATAAGC TAGTGGTTTT CTAACCTGGC TTCTCATTAG AATTCATGCA GAGTTTAGCT 000240 000241 TATAAAAAGT ACACCAGTTT TGGCCCCCAC CCACCAGGAC TGAACTGAAG TCTCTAGTGA TTAAAACTGA CAGATAAAAT 000320 000321 ACAAGATACT GAATTAAATT TGGATTCTAC ATAAACAGTG AAAAAAAATA CAAGTATGTT CCATAATATT TAGAACGTAC 000400 000401 ACTTAAAAAT TATTTTTATC TAAAATTTAA ATGTATCCGG GCATCTCAGT TTTTTGTTCT ATTTTATTTT TGTCTTCTTC 000480 000481 TTTCCTGTCT AGTAAATTAA CTCTACCAAG GGTCCAAATT GGGAATCTCT ATTTTCAGCA ATTCCCATGC TAATTATATT 000560 000561 AAATCTAGGT CTTTTTTTCC CAAATTTTCT TCTTTATTTA TTCTTCTTTT TTAAATTCAT ATTTCAGACT TAAACCGAAG 000640 000641 CACTATCACA CAATATACAT GTTTTTAAAA TTGAGGAGTT AAATATTTCT TATATAAGTA ACCATCTCAA AAGTGTATTC 000720 000721 ATGATTCCAG GTAAGCGTTT TTATTTTAAT AAAATGCTTG TTTCAAATGT CTTATTATTT ACATTGTATC CATCATTGTA 000800 000801 TTCAAAAATA TTTCTACACT ATATTTACTG TTACATGAGA TCATGGCGAT CCAGTTTGGG ATTTTTAAAT GATATTAAAC 000880 000881 CCCTAGTCAA GAAAATAAGA TGAAAAGCAT GCAAGGTGGT CTTTTCCTGC AAGATAATAA AGTTCTATCT TTTCTCCAGT 000960 000961 AGAAGTAGTG CAGTTTCAAA AGTTTTATCA CAATTATTTA GAATGAGGAA AATAATAACT AGAGCTTCTT TCAAAATTAC 001040 001041 CCTAAAGGGG AGGAAAAATA AAAATCAACC CAGAGAAGAA CAAATGGGCA ATTAAGGCAA GTGCAACCAG GTCTCAGGGA 001120 001121 GGAATTTCTT AATCCCCACA GCTTGTAATC GGGGGTTAGG ACCCAAGAGT GTGAAAATTG TCAGTGCAGC AACACAAAAT 001200 001201 CCTGGAAAGA CTCAGTAGGT GCAGAGACTC GAGATGGTAT ATGAGCAGTT GCTGAGAACC TAGAGTCTGG GAAACACAGC 001280 001281 ACATTCCAAC GCAAATCCCG GAGCCCAGGT ACCATGGGAA CAGCTGATCC TCCACAAACA TCTATTGATA TGTGGAGATG 001360 001361 AGATGGGCCC TGACATGCTG TCTGGATATT ATGAGCAAGG TGGAGGGTAA CCAAGGGGAC CAGGCCAACA GCATGGAGCT 001440 001441 GCATAAATCC CAGCTGTGAA TTCAAAAGGG ATGCCTAGGC TTGAATATTC CTTTTGCCCC CAGCTAATGT GTGTACTGAC 001520 001521 CTCTGCTTAA AGAGCTTGGA AATATTTTTA AGTAATTTGG TTCCCATAAA TAGAATGTCC TCTTCAGGTG TTACGTGAGG 001600 001601 AAGAACTAAA AATAATTAGT GCAAATGATC CTCAGACCTT CCACCACCTG AAAGAGCTTT AAAAAAAAAG GGAGGTGGCG 001680 001681 GGGAAAGGAA TAAAGTTTGG TGCTTTAAAA AGAAAATAAA AAGTGTTTTG TACTGGAAAA AAAAAAAAAA AAAAAAAAAA 001760 001761 AAAAAAA |
Predicted Small Protein
Name | NONHSAT078543_smProtein_899:961 |
Length | 21 |
Molecular weight | 2284.6957 |
Aromaticity | 0.1 |
Instability index | 61.725 |
Isoelectric point | 8.34503173828 |
Runs | 5 |
Runs residual | 0.01 |
Runs probability | 0.0457516339869 |
Amino acid sequence | MKSMQGGLFLQDNKVLSFLQ |
Secondary structure | LLLLLLLEEELLLHHHHHHL |
PRMN | - |
PiMo | - |