NONHSAT078794
Revision as of 23:54, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078794 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
400 nt |
Genomic location |
chr20+:17988137..17999652 |
Exon number |
2 |
Exons |
17988137..17988368,17999485..17999652 |
Genome context |
|
Sequence |
000001 ATCATTTGCT TATCTCTCAT GATTCTGTGG ACTAACTGGG CTCAGCTCGG CAGTACTTTT GTTCTATGCA GATTTTCTCT 000080
000081 GCAGCTACAG TCCACTGGCG CTTGGCCAGG CTGGAACGGC CGGGATGCCT CACTTACATG TTTGGTGTCC TGGCAGGGAT 000160 000161 GGCTGGGGGG ATGGGCTCAG TGGGGGTGTT TGGTCAACTG GGCTCCCCTT CCAGGTAGTC TCAGCACCTT TCAGGCTAGA 000240 000241 GTGGACATCA GTTGACTTTG CCTGCCATGG TAGAGACTTT CAGTCATCCA CCATAATCCA TCCCCATTCT GCTGCACAGA 000320 000321 AGTATTGTGG CTGAGACACC TGCTTTTCTC CACCCCTCTA GTTAATGTGA CTAAATTCTC CCTATGGAAT GGGAATGGAA 000400 |
Predicted Small Protein
Name | NONHSAT078794_smProtein_65:217 |
Length | 51 |
Molecular weight | 5273.1694 |
Aromaticity | 0.1 |
Instability index | 43.938 |
Isoelectric point | 10.6939086914 |
Runs | 10 |
Runs residual | 0.0353216374269 |
Runs probability | 0.0389683801449 |
Amino acid sequence | MQIFSAATVHWRLARLERPGCLTYMFGVLAGMAGGMGSVGVFGQLGSPSR |
Secondary structure | LLEEEHHHHHHHHHHHLLLLLLHHHHHHHHHHHLLLLEELEEEELLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooo |