NONHSAT079129
Revision as of 23:56, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079129 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3159 nt |
Genomic location |
chr20-:25121425..25129426 |
Exon number |
4 |
Exons |
25121425..25123467,25124004..25124149,25124915..25125059,25128593..25129426 |
Genome context |
|
Sequence |
000001 AGGAAAAGCT CGAAAATCAG CGTAACGCTG TTGGAGATGA GAGGGCACAG CACAATTTTG AGAGCCAAAC AAAGGCGGGG 000080
000081 CACAGAGCTG TTGCCTCGAG ATGTGTGGCC TCAGAAGGTC TTGTCGAGGC GAGTGATGAA AGGGAGGAGG TTCCCGAGGA 000160 000161 TACTGGAGCC GGAAGACGCG GCGAGGGTCC GGGTTAGCAA ACCGGGCAGA GTCAGAGGCC CAGGACGCCG GGCCCTGGGG 000240 000241 GCGCTGTCGC AGGGCGGCGG CGGAGGCCGG GGTGGTGGGC GCCCCGGGGT GGGGGGAGGC GGGAGTGCTC TCCCAGGTGG 000320 000321 GCTTGGAGGG GCCCCGGCCC AGACACCCAG GGCCAGCCGG CGCACCCGCA TGATGTTCTG AAAGCGTCCC CGCAGCCTGG 000400 000401 TCGGTGGCTG GGGGAAGCTG GGCGTGGTTA GCCTGGCAGC CTGGCTTTGC GGACTCACCT CCGGGCCTCG TCCTCCAGTG 000480 000481 CCTTCCCTCC CCAACTGAGG GGCTTGGCTG CACCCGCACG CGGTTTTCCA GGAACAGCGA TCCCGGAGTG GACTCTCCCG 000560 000561 CATCCAGGGG GACGTCAGCA CTCTCGGCTT CCCCATGGGG ACACACTCAC TGAGGTCACG CGACCCAAAA CCAAATGACC 000640 000641 CACCACCACG ACAGCCGCAT CGTTTTTAGT GGTTTGTCCG GGAGGTTTTA GAGTGAGAGA ATGAAGGGGG TGAGGCCTGA 000720 000721 GGGAGGGAGG CGCATGGAAG CCGCCGCATC TGACTGTCCC AGGGTGTGCC CAGGCCCAGA GATGATGTCC AGACCCCTGA 000800 000801 AGGGAGTGAA GCGGAGGCCC TGCTGGAGGC AAAGGATTCA AGGAGATTCA AAACCCGTGT CACTGCTGCC ATCTTCCTAG 000880 000881 AATCCCTTTA AATCCTCATG GATTTGCTGA CATTGGGAGC ATCCTGAAAG AGTCCCCATG CTAGGGTGGC TGCAGTAACA 000960 000961 GGTACAATGA GAAATGATGG TTCTCCCCAC TCCAGAAAAA ATCAAATCAG ATTGTGAATT TATTCCCTGA CATTAACACA 001040 001041 TGGCATTACA GGAGCATGTA CATCACATGG TCAATTTATT GGCATGAGGA TTATGTCATC GGGGAATAAA TGGGAAATTC 001120 001121 TCAAGGTGGC CCAGGCCTGT AGGCTTCCAG TGAGAAAACT GGAGACCACA CTCACCCGTC CCACTGCCGT TTCTTTGGGG 001200 001201 CTGCCTGTGA TACTGGGTTA TTCCCCTTGC CGAGTTCCAC TGTGCTTACC CTGTTGGAAT ATGATGGTGG ACTTGCCAGA 001280 001281 GGAGATGACC ATGATTTTCA GGAACAGCAG CCCCTCCTTC CTGGTTGAGG CAGCCAGCAG GCACTCCTAT CCATGAGCCA 001360 001361 CAGCTCAGCT AAGGCAATCC AGTCCAGCTG CATGCCCTCT CTCTGCTTCT GGGGAGGTAG GAAGGACCAG GGGCATTCAT 001440 001441 GCTTGTTTCT AGGGGGCCCT AACTGGATCT CTGGATCAAG ACCTACTCAG GGGAGAAAGA CTACTCTGGG TTCCATGTTA 001520 001521 GGACTGACGG GTGCATCTTA ACTGAGATGC AGACAGTGGA CAATTCGAAC TCTGACCTGA GAGCAAGCCC CAGCCTTGGT 001600 001601 GCTCATAAAT GCTCCGCTTG GTCCTTCACA TTTGTGTTCC ACACAGGGGA AGCCAAGTTG TGAGCAGTGC ACCTTCACAA 001680 001681 GCAAAGCCTC GACTGAAATC TTCTCTAACA ATTGGCTGGT CACTCCTGAG CGTAATCTAC CCCTTCAGAA CACTGGGGAT 001760 001761 GAATTTAGAG ACATCGAAGC CTCCTGATGA GAAATACGTG TCCACTCACC GGGAGAACTG AAATACCAGG AGATTTCTAC 001840 001841 ACAAATCTCA CAGAGTCCTT CTGGCGTCCT AGGGGTTTGC TCACATATAA GGGACTTTCT GGTAGGAAGA GAGTCTCTTT 001920 001921 ACATTCTTTA TTATATGATC CTGGTGGCTT TGTAGAGAGA TGGTACAGCT GACAGATCAT GTCCTGTGGG GCCAGGGAGT 002000 002001 TGTGTGTGTG TGAATGCTCT GTGAACTTGG GCAAACTACT TAGCCTCTCT GAGCCTTAGC TGCATCAGCT TTGAAAAACA 002080 002081 GGATGATAAA ATGGAGTCAC CTTATTTGAC TTTTATAAAT ACACTTACAC AATTACACAA GTTGTGGGGA TGGGAAGAGA 002160 002161 GAGTTGGGGA AAGAGAAATG AGAGAGAGAG AGAGAGAGAA TGAATGATAA ACAATTTAAA CAACAGTGGG GTGTAGACCA 002240 002241 ACGCCCAGCC TGGCAAGGGT GAGCCCAGAG AGCCTTCCCT CCTGGCTATT GGCAGCCTCC GCATGGAAGC CTGTCGTTGA 002320 002321 CTTCTTAATG ATGAGAGATG TTCTGGGGGC ACTCCAGGAT TCTTGGACAT GGGATCGTCT TCACAGCTGT GTCTATTGAA 002400 002401 AGCTGAAGTT TCAGTCTCCC CTGCCCCCTG CCCCCTGGAG TGGCTTCCCA GGGGAAATTC AAGGGCACCT GTGACTGCAT 002480 002481 GGCTGCTTTC CTTTCCTTTA CTCAATGCCG TCCTTTGGTG ACAGCCGTGT CTCATGCCAG GATACATGAG GTGCTCTATA 002560 002561 GTAGTATGTT TTCCCTCCTG GGAGGTAATT TTATTTAAAT GTGAAGTCAA AAGGATCACT AAATAGAACC ATGAGGCAAC 002640 002641 CACTCTGGGC ACCTGCCTGG TGATATCCAC AAGAGCTGAC CACAGGTGCC CCCTGTGCCC AGCAAGTCCT TGGCTGGGCA 002720 002721 GTCACACAAC AGGCATGGGG ATGTGTGGCC ACCAAGCCCT CCAGGGCAGT GCTATTTGTA ATAGTCCCAA ATGGGAGAGA 002800 002801 TGGCAAACGC CCGCCAATGG GGCAGCATGG ATAAATGGAT GCTGCACAGC AACGGCGATG AGTGAGCCCC AGCACCCGTG 002880 002881 AGCTCACCAG TGTAATATTG GGTGGAAGAA GCCAGGAGGA AGGGCATTCA CATTCTGTGA TTCCAGCTAC ACTATGTTTA 002960 002961 AATATGGGCA GAGCTAGGCT GTGGTGCTGG AAGCCAGGAC AGTGGGATCC TTGCATGGGG GTGATGGTGC TGGTAGGTTC 003040 003041 TGGTAATTTC CTCTTCTTGA TCTGGGTGTA AACATTTTGT GAAAATTCAA TGAGCTGTAC ATTTATGACT GGTACATTTA 003120 003121 TGACTTTGTA TGAATATTAT ACTTTCATAA AACTACTTT |
Predicted Small Protein
Name | NONHSAT079129_smProtein_1352:1540 |
Length | 63 |
Molecular weight | 6471.3486 |
Aromaticity | 0.0645161290323 |
Instability index | 62.1935483871 |
Isoelectric point | 9.89398193359 |
Runs | 12 |
Runs residual | 0.0399078341014 |
Runs probability | 0.0475549078491 |
Amino acid sequence | MSHSSAKAIQSSCMPSLCFWGGRKDQGHSCLFLGGPNWISGSRPTQGRKTTLGSMLGLTG AS |
Secondary structure | LLLHHHHHHHHLLLLLLEEELLLLLLLLEEEELLLLLEELLLLLLLLEEEEHHHHHLLLL LL |
PRMN | - |
PiMo | - |