NONHSAT079129

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT079129

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3159 nt

Genomic location

chr20-:25121425..25129426

Exon number

4

Exons

25121425..25123467,25124004..25124149,25124915..25125059,25128593..25129426

Genome context

Sequence
000001 AGGAAAAGCT CGAAAATCAG CGTAACGCTG TTGGAGATGA GAGGGCACAG CACAATTTTG AGAGCCAAAC AAAGGCGGGG 000080
000081 CACAGAGCTG TTGCCTCGAG ATGTGTGGCC TCAGAAGGTC TTGTCGAGGC GAGTGATGAA AGGGAGGAGG TTCCCGAGGA 000160
000161 TACTGGAGCC GGAAGACGCG GCGAGGGTCC GGGTTAGCAA ACCGGGCAGA GTCAGAGGCC CAGGACGCCG GGCCCTGGGG 000240
000241 GCGCTGTCGC AGGGCGGCGG CGGAGGCCGG GGTGGTGGGC GCCCCGGGGT GGGGGGAGGC GGGAGTGCTC TCCCAGGTGG 000320
000321 GCTTGGAGGG GCCCCGGCCC AGACACCCAG GGCCAGCCGG CGCACCCGCA TGATGTTCTG AAAGCGTCCC CGCAGCCTGG 000400
000401 TCGGTGGCTG GGGGAAGCTG GGCGTGGTTA GCCTGGCAGC CTGGCTTTGC GGACTCACCT CCGGGCCTCG TCCTCCAGTG 000480
000481 CCTTCCCTCC CCAACTGAGG GGCTTGGCTG CACCCGCACG CGGTTTTCCA GGAACAGCGA TCCCGGAGTG GACTCTCCCG 000560
000561 CATCCAGGGG GACGTCAGCA CTCTCGGCTT CCCCATGGGG ACACACTCAC TGAGGTCACG CGACCCAAAA CCAAATGACC 000640
000641 CACCACCACG ACAGCCGCAT CGTTTTTAGT GGTTTGTCCG GGAGGTTTTA GAGTGAGAGA ATGAAGGGGG TGAGGCCTGA 000720
000721 GGGAGGGAGG CGCATGGAAG CCGCCGCATC TGACTGTCCC AGGGTGTGCC CAGGCCCAGA GATGATGTCC AGACCCCTGA 000800
000801 AGGGAGTGAA GCGGAGGCCC TGCTGGAGGC AAAGGATTCA AGGAGATTCA AAACCCGTGT CACTGCTGCC ATCTTCCTAG 000880
000881 AATCCCTTTA AATCCTCATG GATTTGCTGA CATTGGGAGC ATCCTGAAAG AGTCCCCATG CTAGGGTGGC TGCAGTAACA 000960
000961 GGTACAATGA GAAATGATGG TTCTCCCCAC TCCAGAAAAA ATCAAATCAG ATTGTGAATT TATTCCCTGA CATTAACACA 001040
001041 TGGCATTACA GGAGCATGTA CATCACATGG TCAATTTATT GGCATGAGGA TTATGTCATC GGGGAATAAA TGGGAAATTC 001120
001121 TCAAGGTGGC CCAGGCCTGT AGGCTTCCAG TGAGAAAACT GGAGACCACA CTCACCCGTC CCACTGCCGT TTCTTTGGGG 001200
001201 CTGCCTGTGA TACTGGGTTA TTCCCCTTGC CGAGTTCCAC TGTGCTTACC CTGTTGGAAT ATGATGGTGG ACTTGCCAGA 001280
001281 GGAGATGACC ATGATTTTCA GGAACAGCAG CCCCTCCTTC CTGGTTGAGG CAGCCAGCAG GCACTCCTAT CCATGAGCCA 001360
001361 CAGCTCAGCT AAGGCAATCC AGTCCAGCTG CATGCCCTCT CTCTGCTTCT GGGGAGGTAG GAAGGACCAG GGGCATTCAT 001440
001441 GCTTGTTTCT AGGGGGCCCT AACTGGATCT CTGGATCAAG ACCTACTCAG GGGAGAAAGA CTACTCTGGG TTCCATGTTA 001520
001521 GGACTGACGG GTGCATCTTA ACTGAGATGC AGACAGTGGA CAATTCGAAC TCTGACCTGA GAGCAAGCCC CAGCCTTGGT 001600
001601 GCTCATAAAT GCTCCGCTTG GTCCTTCACA TTTGTGTTCC ACACAGGGGA AGCCAAGTTG TGAGCAGTGC ACCTTCACAA 001680
001681 GCAAAGCCTC GACTGAAATC TTCTCTAACA ATTGGCTGGT CACTCCTGAG CGTAATCTAC CCCTTCAGAA CACTGGGGAT 001760
001761 GAATTTAGAG ACATCGAAGC CTCCTGATGA GAAATACGTG TCCACTCACC GGGAGAACTG AAATACCAGG AGATTTCTAC 001840
001841 ACAAATCTCA CAGAGTCCTT CTGGCGTCCT AGGGGTTTGC TCACATATAA GGGACTTTCT GGTAGGAAGA GAGTCTCTTT 001920
001921 ACATTCTTTA TTATATGATC CTGGTGGCTT TGTAGAGAGA TGGTACAGCT GACAGATCAT GTCCTGTGGG GCCAGGGAGT 002000
002001 TGTGTGTGTG TGAATGCTCT GTGAACTTGG GCAAACTACT TAGCCTCTCT GAGCCTTAGC TGCATCAGCT TTGAAAAACA 002080
002081 GGATGATAAA ATGGAGTCAC CTTATTTGAC TTTTATAAAT ACACTTACAC AATTACACAA GTTGTGGGGA TGGGAAGAGA 002160
002161 GAGTTGGGGA AAGAGAAATG AGAGAGAGAG AGAGAGAGAA TGAATGATAA ACAATTTAAA CAACAGTGGG GTGTAGACCA 002240
002241 ACGCCCAGCC TGGCAAGGGT GAGCCCAGAG AGCCTTCCCT CCTGGCTATT GGCAGCCTCC GCATGGAAGC CTGTCGTTGA 002320
002321 CTTCTTAATG ATGAGAGATG TTCTGGGGGC ACTCCAGGAT TCTTGGACAT GGGATCGTCT TCACAGCTGT GTCTATTGAA 002400
002401 AGCTGAAGTT TCAGTCTCCC CTGCCCCCTG CCCCCTGGAG TGGCTTCCCA GGGGAAATTC AAGGGCACCT GTGACTGCAT 002480
002481 GGCTGCTTTC CTTTCCTTTA CTCAATGCCG TCCTTTGGTG ACAGCCGTGT CTCATGCCAG GATACATGAG GTGCTCTATA 002560
002561 GTAGTATGTT TTCCCTCCTG GGAGGTAATT TTATTTAAAT GTGAAGTCAA AAGGATCACT AAATAGAACC ATGAGGCAAC 002640
002641 CACTCTGGGC ACCTGCCTGG TGATATCCAC AAGAGCTGAC CACAGGTGCC CCCTGTGCCC AGCAAGTCCT TGGCTGGGCA 002720
002721 GTCACACAAC AGGCATGGGG ATGTGTGGCC ACCAAGCCCT CCAGGGCAGT GCTATTTGTA ATAGTCCCAA ATGGGAGAGA 002800
002801 TGGCAAACGC CCGCCAATGG GGCAGCATGG ATAAATGGAT GCTGCACAGC AACGGCGATG AGTGAGCCCC AGCACCCGTG 002880
002881 AGCTCACCAG TGTAATATTG GGTGGAAGAA GCCAGGAGGA AGGGCATTCA CATTCTGTGA TTCCAGCTAC ACTATGTTTA 002960
002961 AATATGGGCA GAGCTAGGCT GTGGTGCTGG AAGCCAGGAC AGTGGGATCC TTGCATGGGG GTGATGGTGC TGGTAGGTTC 003040
003041 TGGTAATTTC CTCTTCTTGA TCTGGGTGTA AACATTTTGT GAAAATTCAA TGAGCTGTAC ATTTATGACT GGTACATTTA 003120
003121 TGACTTTGTA TGAATATTAT ACTTTCATAA AACTACTTT
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Predicted Small Protein

Name NONHSAT079129_smProtein_1352:1540
Length 63
Molecular weight 6471.3486
Aromaticity 0.0645161290323
Instability index 62.1935483871
Isoelectric point 9.89398193359
Runs 12
Runs residual 0.0399078341014
Runs probability 0.0475549078491
Amino acid sequence MSHSSAKAIQSSCMPSLCFWGGRKDQGHSCLFLGGPNWISGSRPTQGRKTTLGSMLGLTG
AS
Secondary structure LLLHHHHHHHHLLLLLLEEELLLLLLLLEEEELLLLLEELLLLLLLLEEEEHHHHHLLLL
LL
PRMN -
PiMo -