NONHSAT079452

From LncRNAWiki
Revision as of 23:57, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT079452

Source

NONCODE4.0

Same with

,

Classification

overlapping(AS),sense

Length

827 nt

Genomic location

chr20-:33284945..33302960

Exon number

3

Exons

33284945..33285050,33286499..33286652,33302394..33302960

Genome context

Sequence
000001 AGGACTGTTG AGCCCTTTTG GTGTTGCGAG TTGAAGTTCA AGGTTTCTAA AATGTTGTCT TGTATTGAAA GGAGCTAATG 000080
000081 CCATTATAAA TGTTACTAGT TTTCACATTT CCTAAGCAGC CTAGAGTACA GGGTGAGCAT TTTTAGATCT CCTAATGATG 000160
000161 TATTGTGCCG TGGAAGTACT GTGTGTGAAT AGCAGTAGTG GGGGCAAAAG CAATCTTCTC ATTTGGAAAT GTTGTAAATA 000240
000241 ATTTTATTAT ATAGTGTTTT GGATGTATTT GTTGTAGAAA TGGACCAGTG AATAAAGAGA ATCTAAGGAT TTGTACAATG 000320
000321 TGAAATAACG TGTTAAATAA ATGTCATTGT CATAGAACAT AAAGTTATGT TATTGGTAAG GGATTTTTGG GTGATCAGCT 000400
000401 CTTTCTTTGG ACCTTAACTA AGCAGACACA GCCTTGTGGA TGGAATTCCT ATCTAGTCCT CATTGAACCT GAGATGCCCG 000480
000481 CCTGGCAAGT TGAGGAAAAT GTACATACTT GCTCCCTCAC CTCATTCTTG GCTTTGAAGA AACTAGCCCT GTTCAGCACT 000560
000561 GTGCCAGttt ccccatctgc agaatggctg gctccatgct cccttaacat acctcccagT CTCAACCTCA AGGCATCGTG 000640
000641 GTTTGTTTGT GTGAACTGCG CTTAATGGCC CTGTCAGCAA GGAGGTGATG ATCAGGACAG GATTCACTTC AGAGAGAAGA 000720
000721 GCAGCTGGTG CTCCCATGAA GGACCAAATG CTATGtgtgg agagggccac aagaggagga cccaagaggg acctctacaa 000800
000801 gctgagagtt gagagtggtc ccctgcc
[back to top]

Predicted Small Protein

Name NONHSAT079452_smProtein_473:664
Length 64
Molecular weight 6862.0004
Aromaticity 0.0952380952381
Instability index 47.1682539683
Isoelectric point 6.50628662109
Runs 9
Runs residual 0.00210560414642
Runs probability 0.0300496575006
Amino acid sequence MPAWQVEENVHTCSLTSFLALKKLALFSTVPVSPSAEWLAPCSLNIPPSLNLKASWFVCV
NCA
Secondary structure LLLHHHLLLLLLLLHHHHHHHHHHHHHLLLLLLLLHHHLLLLLLLLLLLLLLLLLEEEEE
ELL
PRMN -
PiMo -