NONHSAT079654
Revision as of 23:58, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079654 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3748 nt |
Genomic location |
chr20-:37049230..37079565 |
Exon number |
9 |
Exons |
37049230..37049549,37049653..37049747,37050632..37051016,37055062..37055148,37056323..37058254,37059684..37059757,37063147..37063271,37063670..37064009,37079176..37079565 |
Genome context |
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Sequence |
000001 GGCATGTTTC AAGATTTATT GAGTGGGTGA GAGGACAATG GTCCATAGCA CAGAAAAAGT CAACAGGAAC AAATTCTTGG 000080
000081 TTTTCAGAAG TCACACCAGG AGGAGGCGGG AGGACACGGA GGATGGCCAC TGGATGGCCT GGCCTAGATG GAAGAAAACC 000160 000161 TGTCTTCCTG GGCCATGGCA CTCTGTGGCA CTGGCAGGGC AGAGCCAGCT GAAGGGTCTT CAACTCTGGA TCCCAAGTCC 000240 000241 CCAGAGCCAC AGGGCTTTTC CTCTGCCCAC CCACGCTGAG GGAAAAGTCG AATAATGTTG TGCTGAGACA ATAGGGGCAA 000320 000321 GAAGGTCCAG CCATGAGTCA CAGGGTGACA TCACTCGTCA CTCTTGGTCT GTGATCAACC CCCAAACAAT GGCGCGAAAC 000400 000401 GAGCGTAGCT TCCTTGTCGT GTGGCCTCAG TCCTTCGCCG TCCCTCGCCG TCCTTCGCCA TCGCACGCCA CCGCACCCCA 000480 000481 TCTCTCGAAA TCTGCAGACA TCTTGATTTT TCCCACGCTG TCTGTCAGGT CTCCGCCGCC ACTCGACGCC AGGGCGCCGG 000560 000561 GTGAGTCCAC AGCAGGGCGC ATGGTCGGCT CCACTCTCAC CATCGGGGGA AACTGAGGCC CCGGGGAAGG CGGCCAGAGA 000640 000641 GGTCAGGCCC TGTCCTTGGT GCAGTGTCTC GTCCTCTTTG CCGGAGTGAG CCCCCCAGGA TTCGCGTGTC CTCGGGAAAG 000720 000721 ACACTGGCGG AGGCCTTGTG GGCTGTGCTG CACCTCGGAC GGCTTCGCAC CAGCCAGCGC CCTCTCTCTC CTGCAGCACT 000800 000801 CTGATCTGCA CCCCCTGAGG GGCTTCCACT GTCCGCGGGG TGAGAATGCC CCTGGAGGAG TGTAACATGA CTGCCGCCCC 000880 000881 ATGTGTGTGA GAGGCGTCCT CTGGGAGAGC ATGGATCCTG AGGTCCCAGT GTGTTGCTCT TCTCCCTGGC CCAGGGCAGT 000960 000961 TATTGTGAGA CATGAGGGAA GGGTGTGGGG TGATGGGTTT GGCCTCATGG AGCAGAAGGG CTGGGTGTGG AGCTGAGATA 001040 001041 GGGCTGCCCT GCTCCTTCCT CCCGGAAGCT TTCTCTGCCT CCACACCTCT CCTTCCACGT CCTTATCCAG CCCCTGCACC 001120 001121 AAGCTGAACC TGTGGAAATT GTTGCCTGAC TTGTTTCCTG GCTCTCTTTG CTGTGGTCTC AAGGGCAGTG TCTGAATTTT 001200 001201 GTTCCCTACT TTGTTATGTC TGCCAGATGG TCAGTATTCT GACAGTGTGG GACAAAGGAA AAACGGCAGC CTGGGCAACC 001280 001281 CCGCCTCTAT AAGAACTAAA AAATTAGCCA GGCATGGCGG TGCATGCCCC TGTAGTCCTA GCTTCTCAGG AGGCTGAGGC 001360 001361 AGGAGGCTCT CTTGAGCCCG GGAGGACAAG GCTGCAGTGA GCCATGACCA TGCCACTGCA CTCAGCCTGG GCAACAGAGT 001440 001441 GAGACCCTGT CTCAAGAAAG AAAAACGAGA AAGGGAGAGT CCCTCCACTG TAAGGAGATC GGGTTCATTA CATTTTGGGG 001520 001521 TGTTGGAGAA AAATACTGAG TCAGCACCTG TGTGGGATTG GTGGGAGCAG ATTTGGTGTT TTCCACCCCT TCACAGGATT 001600 001601 CTGAGGTAAC TCATTTCTGT TGGCCTTGGC CTTGTATGGG GAGGATTTCC CTCCAGCCTT GTATGGGGAG GATTTCCCTT 001680 001681 GTATGGGGAG GATTTTCCCT CCAGCTTGTG GGAAAGGAAT CAAGGACCAG AGACAGGCAG GGGAGAAGAT CACTGAGGGA 001760 001761 TTTACGGCAG CAGCCTCTGC ACGGCTTCCC CACGACCTCC CCAGCTGCTT GCTGGACGCT GCTGGAGAAA CAGCACATCC 001840 001841 CAAGATCATC ATGGCCCCAG CATCCTCTTG AACTTAGTAA CAGTTGGCCT GACAGATGAA GCGGATATCA TCCCTGCCTT 001920 001921 AGAAGTTCTC TAGCCCCTTT CTTAGAGATA AGCTGCTATT TCATTCCTAA AAGAAGTCAT GGCTGTTCAG GTGAGAAGAA 002000 002001 CGGTTTAGTC AGCATCTATG CAACACTGTA GAGATGCTTA GTGAGAGGTG TTGCAGGAGA GTGGCAGACC GCAGGGCCCG 002080 002081 AGGTAAGGTT TCTTGTCCAT CTCTGGAATT TTGGCTTTTT GCACCCTGTA AAGTCACGTC CCCTTTTTTT CTGGTGCTTT 002160 002161 GGTGGTGACG TAGGGAGAGG TGAGGATGAG AAGAGGAGCC ATGTCCTATG GATTCCCAGA TCCAGACTCC TCTTCCCTGG 002240 002241 GAAAGCTGGA TTGGAGCTGG CCCCTCCTTC TGTGCCTTCA GGGGCTGTGG AGGAGGAGGC CCCTGCAGGG AGCTGCCTGG 002320 002321 GGCGAGCGCT GGGGGCTTTT CCTGCAGTGC ATTAGCAGCA TGTCATAATG GAAAGTGGCT GGATTTCTTT CCAGTTGTAA 002400 002401 TCAATGGTTA AGATTTAACC TAGCAACATT GTAGGGGTAC ACAGCCAAAT GATTCAGGAA AAAAGATGCA GGTTGAGTCT 002480 002481 GGAGGAATCC CTGTGCCAGC TTCCTCATGC TCCCTCCCTC TCTCAGAAAT CACATGGAAC CCATTCTCCC CTCAGCAGTG 002560 002561 AAAATGCATT CAGCCTGTGT GCAGTGTTTC TGCCCAGGGA AGCCCAGTAG GGCCTCCATG CCCGGGGTGT TTACTGGGAT 002640 002641 CTGGTTATGT AGACACCACC TGCCTAGCAC GCACCAAAAT TCCAGACTTT CAGGAAAACA GGTGCCTGTG CCACATTATT 002720 002721 TGCACGGAGA GACTGTGTCC AGTGAACGGT TCTGATCAGT AAACTGTTGA CTAGGAACAT CCCGAGAGCC AAGTTCCCAG 002800 002801 ATGCCAGCCA AGGGCCATCT GACCTGTTTT GAATCTCAAT TTCCTGATAC AGAAAACAAA GAGGATTGTC AGCTGACCTC 002880 002881 TGTCCTGTGT GCCCAGTGGC CCCAGGTGAC GTGTCTTCAA GAAGAGGCTG AGCTGCGGTG CTTGTAAGAG ATGGGTCCGC 002960 002961 TGTGTGCAGA GGCTCCATGG GATGTGTTGT CTTCATAGTA GCAGGTCGCT GGACCATGGG TCCGCAAGGT GGGATTTTGG 003040 003041 ACTGTTGTCT GGAATATGTT TCTTTGCATC CTGCAGAGTC ATGTGCTGTT CCTGGGGCTT GGATGATGTA GGGGAAGCAA 003120 003121 GGTGAAAGTG GTATCCCGTG GTTCCACATT CTGTCCTGCT GTGGGGCTGT CCCTCACATG CTTTCAGTGG CTGTTGCAGA 003200 003201 GGAAGAGCCT CTGGAAATCT GCGTGGGTAA AGTGAGCTCC CCGGGGGAAC CGTCCTCCTC CCTTGAGCGC TGGTGTGTCC 003280 003281 ATAGTGTGCT GTGATCTGGA TTAGCAGTGA GTTTTTCTTT CAGGGTGTGT GTGAGGTCTC AGCCTTAGAT CCAAGGACAG 003360 003361 TCCAAGGAAG TCCTAAGACC ATGGAGTTGG TGATCTGGGA TCTGGGTTTG CTGATATTTC TCACCGTGAG AATCTCTTGG 003440 003441 TGGTGTTTGT GGGCACGAGA GGGGCAGAGA ATGGAGAGTG AGGCTACCAC ATGAAGCGTC ACCAGAGCTG CTCCCTGCTG 003520 003521 CCTGCTCAGA GCACCCCGGA TCCACTGTTC AATCTGCACA AGATTCGGGG TCCAGACATG GGAGACTTCA GCTGCCTCAG 003600 003601 AGGACCGTGG ACAGGGAAGG CCAGCCTCGC ATCCCTCTGT CCATGCCTGG AATGACTTTA ATAACCAAGA GTTTTATTTT 003680 003681 TGAATTTGTA GCTGTCGTTC ACTTTTTACC CACCCATTCA ATAAACCTTA CAGAATTGCT CCATGTGC |
Predicted Small Protein
Name | NONHSAT079654_smProtein_2207:2410 |
Length | 68 |
Molecular weight | 6888.7589 |
Aromaticity | 0.119402985075 |
Instability index | 49.6447761194 |
Isoelectric point | 5.46343994141 |
Runs | 11 |
Runs residual | 0.0208642650621 |
Runs probability | 0.0297891474362 |
Amino acid sequence | MDSQIQTPLPWESWIGAGPSFCAFRGCGGGGPCRELPGASAGGFSCSALAACHNGKWLDF FPVVING |
Secondary structure | LLLLLLLLLLLLLEELLLLLEEEELLLLLLLLLLLLLLLLLLLLLHHHHHHHHLLLEELE EEEEELL |
PRMN | - |
PiMo | - |