NONHSAT079686
Revision as of 23:58, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079686 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1422 nt |
Genomic location |
chr20+:37076726..37078147 |
Exon number |
1 |
Exons |
37076726..37078147 |
Genome context |
|
Sequence |
000001 CGCCTGCATT CGTAAGTGAT CACGGGCTGC CCGTGTCCTG GTCATTGGTA GTGCAGGCAG AGGAAATGCG GGAAAGGTTG 000080
000081 CTGTGTTTGG AGGGTCCACA TCTTCACCCT CCTGTCCCAG GAGCTTTCCT ACACTCCTCC TTCTCAAAGC TGCACACACC 000160 000161 TGGGGCCTCC AGGGGATTGG GGGCTGCCGT GTGTGTTATA TCATGATTAG AGCTTTCACT TCCTGCTCCC TGCTGTTGGG 000240 000241 AACCAGGCTG TGTGTGTTGC TTAAATTCCC CTTGATGACC AGCAGAGTCA CTGCCACTCA GCCATGGCAC ACTGCTGTAA 000320 000321 ACCTGGTTTT GATCTCCTTT CAATCTTTTG CTGATTAACT ACACATTGAT CAGTGTTGGC CACCCTCACC CTGCCATAGA 000400 000401 CCATCCGCTG TCTTCCTCTG TAGAGTTAAC TATTTTCTCT TTTATGAGGA AATAGTGTGT TTGCTTAGGA GTGTTTACTG 000480 000481 TCTGGTAACT ACTGTGCTAA GCCCTTTCCT GTTGCCTGCC ATCCCTGCTG CGAGCAGGGA CAAGCTGGGT GCTCACTCAT 000560 000561 GGCATCTTAT CTGTTGCAGA TAGTCCACTG TGTGCAGAGG CATGGGAGTT GTCATGTTGG GAACATGCTA GACCTCAGTA 000640 000641 TCCTTGAGGT AAGATCTCTG GTTCATTCTC TGGAATGTTG GTTCCTTGTA TCTAGTACAG TTCTGTACAT GTTCCCAGGG 000720 000721 GCTTTGGGGT TGGTGTAGGG GAGCTGAGAG GTGAGATGAG AATGGCACTG TGGGTCCCCA GATCCGCTGT CCACCCAGCC 000800 000801 AACCCAGATC ACCTCTGGCC TTTCCTGTGC CTTCCGGGCT TGCTGCTGGG GGGAAACCTC CAGAGTCCCA CTTTGGTAAT 000880 000881 AAGAGGTCTC TGCCCTTTCT CCCTGGGCAG CAGGATGTTG TAATGGAAAA TGAGTGGACC TAGGCTTCAG AGACTCTGGT 000960 000961 CCCCTGGCTT TGAATCCCCT TCTGCCACTA TCCCAGTCAA GGACTGATTC AGAACCTAAT TTTCTTCATT TGGAAAATAA 001040 001041 TGTTCTGATA GAGGTGACTT TTGTGGTACT TGAGACCATA TGATTCCTAT CATTACCAAC CAATATTTTC CGATTGTTTT 001120 001121 TGCCCCATGT GACTTCTCTG TGATTCCTCC TGGCAAGGAA GTTTTACAGG AAAGCAGGGC CACTTTTGGG ATCCTGTGCT 001200 001201 GGGCTGGATC ATTTTCCTGG ACTGGACCTA GTCCACAAGC TGCTGGCATC TGTTTCTCCT CATGGATCTC TCTCTGCCCT 001280 001281 TGTATACACC TGCATTCAAA AATGATCACG GGCTGCCTGT GCTCTGGTCA TCAATAACGC AGGGAGAGGA ATTGCTGAAA 001360 001361 GCCGTTTCCC GTGTTTGGAG GGTTCACACC TGTCCCTTTC AAATGCTGGC GCTTTCACAC AC |
Predicted Small Protein
Name | NONHSAT079686_smProtein_1079:1336 |
Length | 86 |
Molecular weight | 9232.7521 |
Aromaticity | 0.117647058824 |
Instability index | 41.4576470588 |
Isoelectric point | 6.78167724609 |
Runs | 17 |
Runs residual | 0.0634581105169 |
Runs probability | 0.0329239273876 |
Amino acid sequence | MIPIITNQYFPIVFAPCDFSVIPPGKEVLQESRATFGILCWAGSFSWTGPSPQAAGICFS SWISLCPCIHLHSKMITGCLCSGHQ |
Secondary structure | LLEEEELLLLLEEEELLLLEELLLLHHHHHHHHHHLLEEEELLLLLLLLLLLLLLEEEEL LLLLLLLEEELLLLEEEEEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHH HHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTT TTTTTTTTTTTTiiiiiiiiiiiii |