NONHSAT079929
Revision as of 23:59, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT079929 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1854 nt |
Genomic location |
chr20+:43595194..43604329 |
Exon number |
4 |
Exons |
43595194..43595244,43600719..43600799,43601942..43602074,43602741..43604329 |
Genome context |
|
Sequence |
000001 GGCTGCTGGC AGCGCCATGG AGACGGTACA GCTGAGGAAC CCGCCGCGCC GGCAGCTGAA AAAGTTGGAT GAAGATAGTT 000080
000081 TAACCAAACA ACCAGAAGAA GTATTTGATG TCTTAGAGAA ACTTGGAGAA GGTTGGAAAA ATACTCTTTG GAATCCAGCA 000160 000161 AGAAATCAAG CAGAGAAGGG AAGTAAAAAT GACACACCAG CTGTGCTGTG AAAAGACAAG TCCAAGATGA ATCTGAAGAC 000240 000241 TGCCAGTTGA CTGGCATCAT TAAAGagacg aggtctcact gtgttgccca ggctggtctt gaactcttgg ccttaagtga 000320 000321 tcctcctgcc tcagcctccc aaagtgctag gattagagac gtgaaccact gcacctggAC AAATTGCGTT TTAGATCTAT 000400 000401 GGATGTCTTC TGCAAGGAAT GTGGAAATTT CCCTATGAAG ATATCACCAG GGAGAAAACA AAGCTTCAGA TCTTTCTTCC 000480 000481 CATACTATCA CCTTATTGTT CTTCTAAATA ATACCAGATT TCTGGTATTT CTTGGATTTC TGTTATTCTG ACTGAATGAA 000560 000561 CCTAAGCAAG CCTCATTTAA CTAGGAATAT TTTGAAGGAA GACCTTCACT GCACTTCTTT TCCAAACATG TGACACAATG 000640 000641 CTAttctttt tttttgagat taagtcttgc tctgtcacca ggctggagtg caatgtcaca atctcggctc actgcaacct 000720 000721 ccgcctccca ggttcaagcg attcccctgc ctcagcctcc tgagtagctg ggactatagg cacacaccac cacgcccgac 000800 000801 ttattttttg tattttagta gagatggggt ttcaccatat tggccaggat ggtcttgatc tcgtgatctt gtgatctgcc 000880 000881 tgcctcagcc tcccaaattg ctggaattac agatgtgagc caccacgcct ggccAATGCT ATTCTTAAAT TGTTCGGGAG 000960 000961 GATGAATGGT TTGTGAACTC TCACTGACTT GTATCTTGTG AAATGAGCTA TGGCTAAAAA AACTGTTGGA TTCTGGAGGC 001040 001041 TGCAATCATT CTGTGTTATG AGGATCATAT GGATCTGTGG CAGAGTAGAG CCAAAGCTCC AGACCAGGAT GAGTGGAGAG 001120 001121 CACTTGGGAA GTGTTTTCAA GTGGAGCCTA GCACCTTTTT TCTTCTACTT AAAGTTGTAC ACATTGACTC ATTTGAATTT 001200 001201 TTATCATAGA ATGATAACAA AAGCATCTTG CCCATGGTTT CATAAAAAAT GAGTGCTATT GTTAAGACTT GTATCTGATT 001280 001281 AATTTGGCCT CAGATACTGT GGTATTTCCA TTTTTCTACA TAGATCCTTG CCTTGCATGG CTTATGTAAA ACACCTACTT 001360 001361 CTCCATTCTC TGCTGTCAGT TGTAATTCAT TGAATCATCT CATTTTGTTG TAGGGAATCA AGTTTTAAGG GACTTGCTTG 001440 001441 TGAGTATGAT TGCTGAAATC TTCTAACCAC CCCCTATCCC TGCCTTCAGA TTACTGTAGA TGCAGTATAT GGAATCAGGA 001520 001521 ATCTTAACTT CATGTGAGCT ATTGGAGTTT TCCTTGCTAT CAGGATGCAT AGGGAGGTAT GAAGAGTGTT CTGGTCAAGA 001600 001601 TTGCTGAGTG AGTGTATGAA GAGAACTTTC TAATATATAA GAATAATGAG TGAAAATTAT TTTAAATATA AGGATATATA 001680 001681 GACAGCTATG GACAAGGGAT AGGAAAGAAA TCTAAATAAT CAGCGGAGAC TAAAGCATGC CTTATCCTTG TCAGGAGATT 001760 001761 GCATTTGAGC TTCCTGCATG AAGTTGGGGG CTGGAACTCG GCTCTCCATC TGTGAACTAA AGCTGAAATA AATTTGCCTG 001840 001841 ACCACAACCA GAAA |
Predicted Small Protein
Name | NONHSAT079929_smProtein_398:550 |
Length | 51 |
Molecular weight | 5983.1021 |
Aromaticity | 0.22 |
Instability index | 51.014 |
Isoelectric point | 9.58990478516 |
Runs | 9 |
Runs residual | 0.0153216374269 |
Runs probability | 0.0311782370606 |
Amino acid sequence | MDVFCKECGNFPMKISPGRKQSFRSFFPYYHLIVLLNNTRFLVFLGFLLF |
Secondary structure | LLEEELLLLLLLLLLLLLLLLLHHHHLLEEEEEEELLLLHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToo |