NONHSAT079929

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT079929

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1854 nt

Genomic location

chr20+:43595194..43604329

Exon number

4

Exons

43595194..43595244,43600719..43600799,43601942..43602074,43602741..43604329

Genome context

Sequence
000001 GGCTGCTGGC AGCGCCATGG AGACGGTACA GCTGAGGAAC CCGCCGCGCC GGCAGCTGAA AAAGTTGGAT GAAGATAGTT 000080
000081 TAACCAAACA ACCAGAAGAA GTATTTGATG TCTTAGAGAA ACTTGGAGAA GGTTGGAAAA ATACTCTTTG GAATCCAGCA 000160
000161 AGAAATCAAG CAGAGAAGGG AAGTAAAAAT GACACACCAG CTGTGCTGTG AAAAGACAAG TCCAAGATGA ATCTGAAGAC 000240
000241 TGCCAGTTGA CTGGCATCAT TAAAGagacg aggtctcact gtgttgccca ggctggtctt gaactcttgg ccttaagtga 000320
000321 tcctcctgcc tcagcctccc aaagtgctag gattagagac gtgaaccact gcacctggAC AAATTGCGTT TTAGATCTAT 000400
000401 GGATGTCTTC TGCAAGGAAT GTGGAAATTT CCCTATGAAG ATATCACCAG GGAGAAAACA AAGCTTCAGA TCTTTCTTCC 000480
000481 CATACTATCA CCTTATTGTT CTTCTAAATA ATACCAGATT TCTGGTATTT CTTGGATTTC TGTTATTCTG ACTGAATGAA 000560
000561 CCTAAGCAAG CCTCATTTAA CTAGGAATAT TTTGAAGGAA GACCTTCACT GCACTTCTTT TCCAAACATG TGACACAATG 000640
000641 CTAttctttt tttttgagat taagtcttgc tctgtcacca ggctggagtg caatgtcaca atctcggctc actgcaacct 000720
000721 ccgcctccca ggttcaagcg attcccctgc ctcagcctcc tgagtagctg ggactatagg cacacaccac cacgcccgac 000800
000801 ttattttttg tattttagta gagatggggt ttcaccatat tggccaggat ggtcttgatc tcgtgatctt gtgatctgcc 000880
000881 tgcctcagcc tcccaaattg ctggaattac agatgtgagc caccacgcct ggccAATGCT ATTCTTAAAT TGTTCGGGAG 000960
000961 GATGAATGGT TTGTGAACTC TCACTGACTT GTATCTTGTG AAATGAGCTA TGGCTAAAAA AACTGTTGGA TTCTGGAGGC 001040
001041 TGCAATCATT CTGTGTTATG AGGATCATAT GGATCTGTGG CAGAGTAGAG CCAAAGCTCC AGACCAGGAT GAGTGGAGAG 001120
001121 CACTTGGGAA GTGTTTTCAA GTGGAGCCTA GCACCTTTTT TCTTCTACTT AAAGTTGTAC ACATTGACTC ATTTGAATTT 001200
001201 TTATCATAGA ATGATAACAA AAGCATCTTG CCCATGGTTT CATAAAAAAT GAGTGCTATT GTTAAGACTT GTATCTGATT 001280
001281 AATTTGGCCT CAGATACTGT GGTATTTCCA TTTTTCTACA TAGATCCTTG CCTTGCATGG CTTATGTAAA ACACCTACTT 001360
001361 CTCCATTCTC TGCTGTCAGT TGTAATTCAT TGAATCATCT CATTTTGTTG TAGGGAATCA AGTTTTAAGG GACTTGCTTG 001440
001441 TGAGTATGAT TGCTGAAATC TTCTAACCAC CCCCTATCCC TGCCTTCAGA TTACTGTAGA TGCAGTATAT GGAATCAGGA 001520
001521 ATCTTAACTT CATGTGAGCT ATTGGAGTTT TCCTTGCTAT CAGGATGCAT AGGGAGGTAT GAAGAGTGTT CTGGTCAAGA 001600
001601 TTGCTGAGTG AGTGTATGAA GAGAACTTTC TAATATATAA GAATAATGAG TGAAAATTAT TTTAAATATA AGGATATATA 001680
001681 GACAGCTATG GACAAGGGAT AGGAAAGAAA TCTAAATAAT CAGCGGAGAC TAAAGCATGC CTTATCCTTG TCAGGAGATT 001760
001761 GCATTTGAGC TTCCTGCATG AAGTTGGGGG CTGGAACTCG GCTCTCCATC TGTGAACTAA AGCTGAAATA AATTTGCCTG 001840
001841 ACCACAACCA GAAA
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Predicted Small Protein

Name NONHSAT079929_smProtein_398:550
Length 51
Molecular weight 5983.1021
Aromaticity 0.22
Instability index 51.014
Isoelectric point 9.58990478516
Runs 9
Runs residual 0.0153216374269
Runs probability 0.0311782370606
Amino acid sequence MDVFCKECGNFPMKISPGRKQSFRSFFPYYHLIVLLNNTRFLVFLGFLLF
Secondary structure LLEEELLLLLLLLLLLLLLLLLHHHHLLEEEEEEELLLLHHHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToo