NONHSAT080147
Revision as of 00:00, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080147 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4418 nt |
Genomic location |
chr20+:47099574..47133397 |
Exon number |
3 |
Exons |
47099574..47099732,47100198..47100241,47129183..47133397 |
Genome context |
|
Sequence |
000001 GTCAGTTGGG GATCAGAGGC CACACTCATC GTAGCAGAGA GGCAGGAACA GCTGGGCGAG GGTCCTTCTG TGACATCTAC 000080
000081 TGCATCACTG GGCTCTGTGA AGTGACTCAG CTGCCAGAAC TCACACAATA TTCTGCACCA AAACCTCACG GGAAAAATGC 000160 000161 ATCACGAACC TCAGACTTAA ACAGCACAAC AGGctcctcc cagGTCTCCA GTTCCACAAC CCTCAAACTA CACAGCAGCA 000240 000241 CCGGCTCCTC CCCAGGTCCA CAGCTCCACC ACCCTCATAC TAGACACCAA GACTACCTCC TCCCTGCTCT CCAGCTACAC 000320 000321 GACCCTCAGT CTTGAACAGC AGCAGCTCCT CTCTGTACCT CAAGCCCCAC GAccctcaga cttgaacaag aacaacacca 000400 000401 tctcccccca gggctccagc tcggggacct acagatttaa acagcagcac cggctcttcc tgtgatctcc agctccacta 000480 000481 acctcaaact agaatagcag caccggctcc tctttgggtc tccagcttca ctactgtcag gctggaacag caacaccggt 000560 000561 tcctccctgg gtctccagct caacgactct cagatttgaa aggcagcacc ggctcctcac aaagtttctg gctccaaggc 000640 000641 cctcaaacta gaatagcagc agctgctgca tcttgggtct ccagctccac aacccTCAAA GTAGAAAAGC AGCCCTGGCT 000720 000721 CCTCCCTGCC TCTCCAGCTC CTCAAGTCtg agtgttgtag agctggagac gcagggagga gtcagtgctg ctgttctagt 000800 000801 ttgagggtcg tggatctgga gacccagggt ggagccggtg ctgctgttct agtttgaggg tcatggagct ggaagacccc 000880 000881 gggaggagct gctgctgctg ttctagtgtg agggtcatgg agctggagac ccgggaagga gTCATTTGAA CAGCAGCACT 000960 000961 GGCCCCTCCC CAGGTCTCAG GCTCCACGAC CCTCAGACTT AAAAAGCCGT AGTACGGGCT TCTCCCTGGG TCTCCAGCTC 001040 001041 TACAACCCTC AGACATGAAC AGCAGCACCG GCTCCTCCCC CTGTCTCCCG TTCCATGACC CTCAAACTAC AACAGCAGTA 001120 001121 CCAGCCTCTA CCCAGGTCTC CAGATCCACG ACCCTCAAAA TAGAATGGCA TCACCAGCTC CTCCCTGGGT CTCCAGCTCC 001200 001201 CAAACCCTCA AACTTCAACT GACACAGCAG ATCCTCCCCA CAGTTAAACA GCAGCATGGG CTGTTCCCCA AAACTCCAGA 001280 001281 TCCCTCTGAC TTAAATGGCG GTAGCACCAG ctcctcccca ggtctccagt tccatgaccc tcaaactaca acagcaacac 001360 001361 aggctcctcc ctgaatctcc agctcaacaa CTCTCAGACT TGAGAGGCAG CACCGGCAAC TCCCCAAGGC TCCAGCTCCA 001440 001441 CCACCCTCAG ATTTGAACAA CCGTAGCACG ACctcctgac caggtctcca gcttcatgat ccttaaacta gaacagcagc 001520 001521 accgctgcct ccctgggttt ccagctccac gaCCTTAAGA CACGAATGGC AGAACTGGCT CCCCACCAGG GTTCCAGCTT 001600 001601 CGGGACCTAT AGATTTAAAT GACAGCACCG GCTCTTCCCA GGATCTCCAG CTCCACTCCC CTCAAACTAG AACAGCAGCA 001680 001681 TCAGCTCCTC CCTGGCTCTC CAGCTCCCAA ACCCTCAAAC TTCAACTGAC ACACAGGATC CTCCCCACAG TTAAACAGCA 001760 001761 GCATGGGCTG TTCCCCAAAA CTCCAGATCC ACAACCTTCT GACTTAAATG GCGGTAGCAC TGGTtcctcc ctagatctcc 001840 001841 agttccatga tcctcaaatt acacagcagc actggctcct ccacaggtct ccagctccac caccatcaca ctagaCACCA 001920 001921 AGACTACCTC TGCCCCTCTC TCCAGCTACA CGACCCTCAG ACTTGAACAC CAGCAGCAGC TCCTTCCTGT ACCTCAAGCC 002000 002001 CCATGACCTC GGATTTGAAC AACAACAACA CCAGCTCCTG CCTAGGGCTC CAGCTGCAGA ACCCACAGAT GTAAACGATG 002080 002081 GCACCGGCTC TTCCCAGGAT CTCCAGCGCC ACTACCCTCA AACTAAAACA GCAGCACCAG CTCCTTTCTG GTTCTCCAGT 002160 002161 TCCATAACAC TCAGGCATGA ACAGCAGCAC CCACTCCTCC TTCCGGCTCA AGATTCACTA CCCTCAGACT AGTACAGcaa 002240 002241 aaccggttcc tccctggatc tccagctaaa tgactctcag actggaaagg cagcaccagc tcctccgtgg atctccggct 002320 002321 ccacgacact caaaacaaca cggctcctcc ctgggtctgt acctccatga ccctcaaact acaacaacac tgctcctccc 002400 002401 tggctctgca gctccaccac cctcaaacta gaacaagact tctcctcccc agggtgccag ctaccgaacc ctcaaattac 002480 002481 aacaacattg ctcctccctg ggtctgtagc tccaggaccc tcagaccaga acaagacctc tcctccctga gtctccagct 002560 002561 tccggaccct tgaattacaa caacattgct cctgcctggg tctgcatctc cacaaccctc aaattaaaac aagatctctc 002640 002641 ctccctgggt caccagcttc gtgaccctcg aactaaaaca acaatgctcc tgcctgggtc tgcagctcca cgaccctgaa 002720 002721 actagaacaa gacctctcct ccctgggtca ccagcttcct gaccctcgaa ctacaacaaa attgctcctc cctgatcagc 002800 002801 agctccacca gcctcaaact cgaacaagac ttctcctccc caggttgcca gctaccagac cctcgaatta caacaacatt 002880 002881 gctcctccct gggtctgcag ctccacgacc ctcagaccag aagaagacct ctcctcccct gggtcgccag cttcctgacc 002960 002961 ctcgaattac aaccaaactg ctcctccctg ggtcggcagc tccacgaccc tcaaactcca acaacacttc tcttccctgg 003040 003041 gttgccagct accggaccct tgaattacaa caaaattgct cctccctggg tctgcagctc cacgaccttc acaccagaac 003120 003121 aagacctctc ctccctgggt cgccagcttc cggaccctcc aattacaaca acattgctcc tccctggttc ggcagctcca 003200 003201 cgaccctcaa actagaacaa gacctctcct ccctgggtct ccagcttcca gaccctcgaa ttacaacaaa attgctcctc 003280 003281 catgggtctg cagctccacg accctcaaac tagaacaaga cctctcctcc ctgggtcgcc agcttcctga ccctcgaact 003360 003361 gcaacaaaat tgctcctccc tggtcggcag ctccacgagc ctcaaactcg aacaagactt ctcctcccca ggttgccagc 003440 003441 taccacaccc tcgaattaca acaacattgc tcctccctgg gtctgcagct ccatgaccct cagaccagaa caagacctct 003520 003521 cctccactgg gtcgccagct tcctgatcct cgaattacaa caaaattgct cctccctggg tcggcagctc cacgaccctc 003600 003601 aaactagaac aagacctctc ctccctgggt cgccagcttc ctgaccctca aattacaaca aaattgctcc tccctgggtc 003680 003681 tgtggctcca caaccctcag accagaacaa gatctctctc ctccctgggt ctccagcttc tggaccctca aattacaacc 003760 003761 aaattgctcc tccctgggtc ggcagctcca cgaccctcaa actcgaacaa gacttctcct ccccgggttg ccagctaccg 003840 003841 gaccctcgaa ctacagcaac attgctcctg cctgggtctg cagctccacg aaaatcaaac tagaacaaga cctctcctcc 003920 003921 ctgggtcgcc agctttctga ccctcgaact acagcaatgt tgctcctgcc tgggtctgca ctccacaacc ctcaaactag 004000 004001 aacagcagca ccagctgctt cctggacttc cagctcaatg actcTCACAC TTCAATGGCA GCAATGGCTC CACCCCCAGG 004080 004081 CTCCAGCTCC AACACCCTCA GATCTGAGCA GCGGCAGCAC CAGctccttt ctgggtcttc tgtttcacga tccttaaatt 004160 004161 agaacagcag caccatcttc tccctgggtc tccagctcca cgaaactcaa gctagaatag cagcaccggc tcctctggga 004240 004241 tcttcagctC CACGACCCTA AGACATCAGT GGCAGCACTG GCTCCTCCCC TGGGCTCCAG CTCCAGGACC CTCAAACTTG 004320 004321 AACAGAAACA CCAGCTCCTC CCCAGGCCTC CAGCTCCTTG ACCCTCATAA ACAATCCCTT CTTATGAAAT GTAGCAGTCA 004400 004401 GGAAAACTGT AGAGGAAG |
Predicted Small Protein
Name | NONHSAT080147_smProtein_2366:2572 |
Length | 69 |
Molecular weight | 7696.7615 |
Aromaticity | 0.0294117647059 |
Instability index | 79.8338235294 |
Isoelectric point | 8.88629150391 |
Runs | 7 |
Runs residual | 0.037559618442 |
Runs probability | 0.0454866631337 |
Amino acid sequence | MTLKLQQHCSSLALQLHHPQTRTRLLLPRVPATEPSNYNNIAPPWVCSSRTLRPEQDLSS LSLQLPDP |
Secondary structure | LLLLHHHHHHHHHHHLLLLLLLEEELLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLL LLLLLLLL |
PRMN | - |
PiMo | - |