NONHSAT080236
Revision as of 00:01, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080236 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
492 nt |
Genomic location |
chr20+:48429431..48431981 |
Exon number |
2 |
Exons |
48429431..48429485,48431545..48431981 |
Genome context |
|
Sequence |
000001 GAACTCGGTG GTCCTGGAAG CTCCGCAGGA TGGGGGAGAA GATGGCGGAA GAGGAGAGGT TCCCCAATAC AACTCATGAG 000080
000081 GGTTTCAATG TCACCCTCCA CACCACCCTG GTTGTCACGA CGAAACTGGT GCTCCCGACC CCTGGCAAGC CCATCCTCCC 000160 000161 CGTGCAGACA GGGGAGCAGG CCCAGCAAGA GGAGCAGTCC AGCGGCATGA CCATTTTCTT CAGCCTCCTT GTCCTAGGTG 000240 000241 AATATGGACA CTGTCATCCC CATCATCTGC CATCCCGTGT CTGTGTGCTC GGTCTGTGTG TTTAACCCTG TCACTCCTCT 000320 000321 TGACTGTCAA GTCTTCCTCC CATTTGGTTT TCATATCAAA CACTGAGGGA ACATGATCAG TTTATAACAT CATTAACAGG 000400 000401 AAACTCTCTT CTTTATAAAA TCATGGTGCT TAGCAAGTTC TGAAGAGCTG TTGATGTAAT ATCTTGGCCT TTGAAAGAAG 000480 000481 GATTAAAAAA AT |
Predicted Small Protein
Name | NONHSAT080236_smProtein_29:304 |
Length | 92 |
Molecular weight | 10024.4503 |
Aromaticity | 0.0549450549451 |
Instability index | 48.5373626374 |
Isoelectric point | 5.78643798828 |
Runs | 11 |
Runs residual | 0.0125915750916 |
Runs probability | 0.0491561079796 |
Amino acid sequence | MGEKMAEEERFPNTTHEGFNVTLHTTLVVTTKLVLPTPGKPILPVQTGEQAQQEEQSSGM TIFFSLLVLGEYGHCHPHHLPSRVCVLGLCV |
Secondary structure | LLLLLLLLLLLLLLLLLLLEEEEEEEEEEEEEEEELLLLLLEEEELLLHHHHHHHHLLLL EEEEEEEEELLLLLLLLLLLLLLEEEEEEEL |
PRMN | - |
PiMo | - |