NONHSAT081201
Revision as of 00:05, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081201 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1687 nt |
Genomic location |
chr21+:16806721..16809546 |
Exon number |
3 |
Exons |
16806721..16807118,16807725..16807828,16808362..16809546 |
Genome context |
|
Sequence |
000001 gttctcatag gaatagataa aaagcctgtt tgggtgggtg tggtcatggt cttagtttcc ttttccatga ttaatattcc 000080
000081 ctggttagtg aggggaacag gggatcgaag gcaattgtgt tttttggaag aacttccctt agtcagataa gaaaacttca 000160 000161 gagagagctc ctgcctgtgc ttggagggag aaattaaggg agggccagag aaacttcaat tctggggcag cttctaagtc 000240 000241 cttccaactt cctttaatac aaagtgctca gcatgcaaaa gtgccgtacc ttggggtatc attttctgTT GACTAGCCCA 000320 000321 AAAGAATGAA GCTTAAAAAA AAAAGAGAAT CTCCAAATTT TTCTAATTTA TAAAAATTGA ATGAATGTGG CATTGAATCA 000400 000401 GGGATTTAAA ACAGAGTGTC TTAACCATTT TAAAGTAATA TAGTGCTAAA GTGCATGCTG AGTAATTCCA GGAGGTCttc 000480 000481 tttttttttt tttttttttt tGATTCCTAG TATCTTAAAT GTCTGCCAAA ACAACTTATA TGGCTTTTGT TAGTTGTCAT 000560 000561 ATTGAAGAGG AAATTAAAGA CACCATAGCA ACCCAAAATT TTCCAAGAAT CTGTGGACAT ATGAGTCTGC TGTGTGCTTT 000640 000641 TCAATATTTA CAGAGTCAAC TATAAGCTAT CATGGTTTTA TAAAGCTGGT AGTAGTCCAA TCCCACATAC ATGTCAAGTG 000720 000721 CCTTTGGGAA CAACAAATAA CTCATTAGAC CTGTCCCCAA GTCTCCAGTT TATAATCCTC TTCAGATTAT GTGTTGTCCT 000800 000801 TTGGGTTTTG AAAAAAACCA CATAACAAAA CCTACTTCTT TTCCAGGCCC AAGTTTGTGA TGCTTTCTTA CTTCTCCAAG 000880 000881 TTCACCTCGC TAGTAACAGT ACTATTTCCT CAAAATTAAA CCCAGAGGCA GTTTGATGCA GACAACTTCT TTGAGTTTCC 000960 000961 CATAACCAAA AAATATATAT TGACATTTGT GCTGGACTGC AATAAATGCA TGCCCTGCTG TGCCCACCCT GATCCTGTTC 001040 001041 ACAGGAAACC CCTGACAAAC AACTCCAAGC CTTAGAAAAT CTCTCGTTTC TGGTTATAGT CTCTTAAAGG ATTGTATAAA 001120 001121 ACTTAGAATA TTTTATCTGG CTTTTCCCTT TCTTCAGGGA AAAAAAAAAA TCTCCAGTGA ATGATATCAC TTACACAAAA 001200 001201 AGAACAAAAT GCattttttt tttttatttt ttaatGACTT TCTTTTAACC TACCCAAACT GCATGCTAAG CCCAAACTTT 001280 001281 GTAATTCATG GTCTTAGAAA TGTTATGTTA TCAGTTCCCT GTCCCTTTCA TGGGCTGCCC CCTTTCTACT CTTTCAAGAG 001360 001361 CCTGGTAAGT CATATGATTG ACTTTCAAAC CAAGACTGGT TGATGTGAGT AAAGGAAATT GAATTGGAAT ACAATCACCC 001440 001441 CCTACTGCTC TGAACAGTTT TTTGTGCATC TAAATATGAT CTGAATTTCA GATATGGTTT TCTATTTGAC ATTGATTTTC 001520 001521 CTCCAGCTTA TATGTGCTAC ATCTTTACCT AAATTGAGTT GTTATCTTCT TCTGCCTTTT TGAACTTCAC ACTATAAATT 001600 001601 AACTATTATC CTACTGAAAT AAATTCCTTT GCAGATTTTA TGTATATGGA AGGAATTTCA ATTTCATTTG AGGATACACA 001680 001681 TTGAGTT |
Predicted Small Protein
Name | NONHSAT081201_smProtein_1208:1402 |
Length | 65 |
Molecular weight | 7490.7885 |
Aromaticity | 0.203125 |
Instability index | 47.82828125 |
Isoelectric point | 7.87359619141 |
Runs | 11 |
Runs residual | 0.02328125 |
Runs probability | 0.0361243596537 |
Amino acid sequence | MHFFFLFFNDFLLTYPNCMLSPNFVIHGLRNVMLSVPCPFHGLPPFYSFKSLVSHMIDFQ TKTG |
Secondary structure | LEEEEEEELHHHLLLLLLLLLLLLEEELLLEEEEEELLLLLLLLLLLLHHHHHHHHHHHH LLLL |
PRMN | - |
PiMo | - |