NONHSAT081210
Revision as of 00:05, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081210 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1152 nt |
Genomic location |
chr21-:17066619..17068900 |
Exon number |
2 |
Exons |
17066619..17067073,17068204..17068900 |
Genome context |
|
Sequence |
000001 ATGTATGTAC TGTGGGCTGT GGGCTCAGTT AGGGCCTGGG TTCCAAAATT CAGCTTAATG CAGGAGACTA GACCCTTTGG 000080
000081 AGTTGGTTGT AGTTTTATAG CAAAAGAAGT GAGAGTGAAT AATGCATTTT AGGTAGTGGG ACAAAAATAA GTTGCTTGAG 000160 000161 GCAAAACCCG AATGATGATA CTGGCTTTAA AGAATATGAT CTTAATAAGG AAAGCTTTAT GATGGTTATG ATGGTATCCC 000240 000241 AAAGCAGTGG CAGCACCAGC CCCGTCTACA ACCCAGTGAT CGAATCCTGC CACTGCTGCT GCAGTTGTTT CAACTATAAC 000320 000321 AGCAGCTGTG GCTCAAGTCC CAGCCTCTGT CTTTGCTTTG CTTGCCACTT GTGCGGCTGT ACCCATCACT CCAGCATCAA 000400 000401 AGACAGTATC TTCTGCACCT GCACCTAGTA GTGCAACTAA ACAAGAGAAA CTTGCAGAAA AGTCAGTGAG AACATCAGTG 000480 000481 ATTAGTAGCC CAATATCAAC TGAGAACTCA TTAGAAGATT TTTCTCTGGA AAACATTTTG AAGATGCATC AAGAACATTA 000560 000561 ATGACAGATT GACCTTATAA AAATAGGGTA ATGAGATCAT GTAAACATGT TATGACCAGG AACAAATAAT TACAGCTCTC 000640 000641 AAAACTAGTT TCAACAACGC TGGCAGAGCA GTAAAGTATC TTTTCTTTTC TTTACCAAAT ATCTTTTAAT GGGAAGTCCT 000720 000721 GGAAAAATAG AAAGCAAGGC TATAGTTGAA CCTCCTTAAG TGGCTAGTAC TGGACTCCTC CATCTTCACC AGAGGCAACA 000800 000801 GCTGCAGCAA CTACAGCAGC ACCTTCTAGA GGATCTGCCC TTGAATTTTG ATGGAATCAG CCTCAGTTTC AATACAGGAT 000880 000881 ATACAACACT TAACAGAATC TGTCCCTGCT TCCAGTATTG CTACCTCAGA TAGGTCAAGA GACTCCTCAA TGATTGGTAC 000960 000961 AAATTAGCCA ACCTTGGGAA CATTTATTGA AATGCCAAAT GGACCAGTCC TAGAAGCTAG TGGAGGAGTG GTTGGAAGTG 001040 001041 GCAGTGGAGG AGCCGATGAG GCAAAAGTGT GCTTAACCAC ATTCAAGCAT TGCCCCAGGA AACAGACACC AGAGAAAGGT 001120 001121 CAACTGCATC AGGATTTCCT GAGGGACTCG TG |
Predicted Small Protein
Name | NONHSAT081210_smProtein_218:427 |
Length | 70 |
Molecular weight | 7362.5148 |
Aromaticity | 0.0724637681159 |
Instability index | 106.62173913 |
Isoelectric point | 6.35101318359 |
Runs | 11 |
Runs residual | 0.0200889654183 |
Runs probability | 0.0284402049108 |
Amino acid sequence | MMVMMVSQSSGSTSPVYNPVIESCHCCCSCFNYNSSCGSSPSLCLCFACHLCGCTHHSSI KDSIFCTCT |
Secondary structure | LEEEEEELLLLLLLLLLLLEEEELLEELLLLLLLLLLLLLLLHHHHHHHHLLLLLLLLLL LLLEEEELL |
PRMN | - |
PiMo | - |