NONHSAT082652
Revision as of 00:11, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT082652 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1406 nt |
Genomic location |
chr21+:45905454..45911022 |
Exon number |
2 |
Exons |
45905454..45906113,45910277..45911022 |
Genome context |
|
Sequence |
000001 AGAAACTGCT GGATGCTGAG AGGAACGCAT CAGTGGAAGA AAACAAGCGG CTGGACGTGG AGAGGACGTC AAGGGAGCAT 000080
000081 GCCGGCGGAA GAGCACACCA CAGACGCCGG CAGGCCACCG AGCGGCAGGA CCAGGCGGAG TTTGGCCGGG GCAGTCGGAG 000160 000161 GAGAGCTAGG CCACTAAGCA GCTCAACTCC AGGAGATAAA CCATCTCCCT TGTGGCTCCT CCGTCGGCTG AGAGCTGCTT 000240 000241 CCACTCAATA ACACTTTGCA CTCGTTCTCC AAGCCCCCGT GTGATCCGAT TCTTCTGGTA CACCCAGGCA AGAACCCAGG 000320 000321 ATACAGAAAG GCCTCGGTCC TTTCCACAAG TACCTCTACT TGAGGTACTC ATTGACCTGG TTAACACAAG CTGCCTACAG 000400 000401 ACGCCAAAAC TAAGGGCACC CTGGAACACA GGCTTCAACT GTAAACATTC ACCCCTGGGC ACTGCCGTGG GGTGGGAGCC 000480 000481 TGCCTGAGTG TATGCTCCCC TAGAGGTTTG AGCTGCGGGG CACTGAAGAA GTGAGCCACA CTCCCATCGC ACACTGCGAG 000560 000561 GGGGACAAAG GAACTTTTCC TCTTTTAACT GGGGCCTCAT CTGGAATCTC GGAAGGTGAA TGTCTGCCTT CGAAAACCCT 000640 000641 ACCACCTGTC TTTCTTGTGG ATCACCCTGG CCTGCCATGC CCCCATCCTG GGCCTATAAA AACCCTGAGA CCCTAGCAAG 000720 000721 GCAGAGATAG AAGCTGCCGG ATGCTGAGAG AAACACATCA GTGGAAGGGA AGAAGAAAAG CGGCTGGACA TGGAGAGGAC 000800 000801 GTCAGTGGAG CATGCCGGCG GAAGAGCACA CCCACAGACC CTGGCACGCC GGCAGGCCAC GTAGCGGCAG GCCACGTAGC 000880 000881 GGCAGGCCAC GTAGCGGCAG GCCACGTAGC GGCAGGCCAA GGCGGAGTTT GGCCGGGGCA GTCGGAGGAG AGCTAGGCCA 000960 000961 CTAAGCAGCT CAACTCCAGG AGAAAACCAT CTCCCTTCTG GCTCCTCCAT CAGCTGAGAG CTGCTTCCAC TCAATAACAC 001040 001041 TTCGCACTGA TTCTCCAAGC CCAGGTGTGA TCCGATTCTT CTGGTACACC CAGGCAAGAA CCCAGGATAC AGACAGCCCT 001120 001121 CTGTCCTTTT GATAACTAGA GGGTCTCATT GACCTGGTTA ACACAAGCTG CCTACAGACG GCAAAACTAA AAGAGCACCC 001200 001201 TGGAACACAC GCCCACTGGG GCTTCAGCTG TAAACATTCA CCCCTAGACA CGGCTATGGG GTTGGAGCCT GCCTGTCTGT 001280 001281 ATGCTCCCCT AGAGGTTTGG GCAGCAGGGC ACTGAAGAAT CAAGCCACAC CCCCATCGCA CACCCTGCGA GGGGGACAAG 001360 001361 GGAACCTTTC TCTTTTCAGT TGGTCTTAAT AAACACTGAG TAAATG |
Predicted Small Protein
Name | NONHSAT082652_smProtein_740:955 |
Length | 72 |
Molecular weight | 7187.8045 |
Aromaticity | 0.0281690140845 |
Instability index | 52.1549295775 |
Isoelectric point | 9.18463134766 |
Runs | 7 |
Runs residual | 0.0499629355078 |
Runs probability | 0.0183082241906 |
Amino acid sequence | MLRETHQWKGRRKAAGHGEDVSGACRRKSTPTDPGTPAGHVAAGHVAAGHVAAGHVAAGQ GGVWPGQSEES |
Secondary structure | LLLLLLLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLEELLLL LLLLLLLLLLL |
PRMN | - |
PiMo | - |