NONHSAT083123

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT083123

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1288 nt

Genomic location

chr22-:16909690..16957613

Exon number

9

Exons

16909690..16909904,16914068..16914203,16915106..16915196,16919027..16919177,16920053..16920131,16940672..16940846,16953593..16953719,16954829..16954970,16957442..16957613

Genome context

Sequence
000001 CAGGAGTTAC ACTGTTTGTG ATATGGTGTA TGACCTGGTC AATCTTAGGC TCTGAAGCTC TCCCTGGTGG AAATTTATTT 000080
000081 GGATTGTTAA TTATTTTTTA TAGTGCCATT AGTGGGGGAA AAATTTTACA ACTCATTAGA ATACCTTTAG TGCCTCCACT 000160
000161 TCCACCTCTT CTAGGGATGT TACTGGCTGG TTTTACAATT AGGAATGTTC CATTCATCAA TGAACATGTC CATGTTCCTA 000240
000241 ACGCATGGTC TTCAATTTTA AGAAGCATTG CCCTTAACAT TATTCTAATA CGAGTTGGGC TTGGACTCGA TCCATTCAGG 000320
000321 CTTTGAGGCA TTTGAAGGTG GTTTGTTTCA GATTGGCTGT AGGTCCACGC CTTATGGAGG CAAGTGCAGC TGCTGTTTTT 000400
000401 TCCCACTTCA TTATGAAATT TCCCTGTCAA TTGGCAATTC TTTTGTTCTA GGTGCTGTCT CTCCTGCTGT TGTTGTCCTT 000480
000481 TACACAATGG TGTCGCAAGA AAATGGATAT GGTGTTGAGG AAGACATTCC AACCTTACTA ATGGCTGCTA GCAGTATGGA 000560
000561 TGACATTCTG GCTATCACTG GATTCAATAC ATGCTTGAGC ATAGTCTTCT CCTCGGCAGG TGGTATGCTT AATAACGCCA 000640
000641 TAGCCTCTAT AAGGAACGTA TGTATTAGTC TGCTGGCAGG AATTGTTTTG GGATTCTTAC ATTGAAGAGA GGATTCCTTG 000720
000721 TTTTGACTAC GTGTGTTTCT GCTGTCTTAG GCAGCCAACG TATTGGTTTA CATGGATCTG GAGGATTATG CACACTAGTG 000800
000801 TTGAGTTTCA TTGCAGGGAC AAAATGGTCC CAAGAAAAGG TGAATACCAA AAGATTATTA CAAATGTATG GGATATTTTT 000880
000881 CAACCACTTC TTTTTGGTTT AGTTGGAGCA GAAGTATCTG TTTCATCACT TGAATCAGGC ATATCTGTTG CTACTCTGAG 000960
000961 TTTGGCATTA TGTGTTCGAA TTTTAACCAC ATATCTATTG ATGTGCTTTG CTGGTTTTAG TTTTAAGGAG AAAATATTTA 001040
001041 TTGCTTTAGC ATGGATGCCC AAAGCTACAG TACAGGCTGT GTTAGGTCCT CTGGCTCTAG AAACAGCAAG AGTCTCCGCA 001120
001121 CCCCACTTGG AACCATATGT GAAGGATGTG ATGACAGTAG CATTTTTAGC CATCTTGATC ACAGCTCCAA ATGGAGCTCT 001200
001201 ACTTATGGGC ATTCTGGGGC CTAAACTGCT TACACGCCAT TATGATCCAA GCAAAATAAA ACTGCAATTG TCAACATTAG 001280
001281 AACATCAT
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Predicted Small Protein

Name NONHSAT083123_smProtein_29:325
Length 99
Molecular weight 10648.7503
Aromaticity 0.0816326530612
Instability index 54.3847959184
Isoelectric point 10.7805786133
Runs 14
Runs residual 0.00381460995613
Runs probability 0.0731193378252
Amino acid sequence MTWSILGSEALPGGNLFGLLIIFYSAISGGKILQLIRIPLVPPLPPLLGMLLAGFTIRNV
PFINEHVHVPNAWSSILRSIALNIILIRVGLGLDPFRL
Secondary structure LEEEEELLLLLLLLLHHHHEEEEEEELLLLLEEEEEELLLLLLLLHHHHHHHHLLEEELL
LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHLLL
LLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLL
PiMo ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiTTTTTTTTTTTTTTTTTTooo
oooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiii