NONHSAT084403
Revision as of 00:17, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT084403 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3091 nt |
Genomic location |
chr22-:25675290..25679061 |
Exon number |
3 |
Exons |
25675290..25677202,25677209..25678258,25678949..25679061 |
Genome context |
|
Sequence |
000001 GGCGGCGTGG GGACCAGCGC GGGCCGGGGC AGCTGGTACC TGGGATCGGG CAGGACGGTC CTCTTGCTGG CGCGGGCGGC 000080
000081 CGGAGTCGCC TTGCTCTTCT CCATGGCCAT CAGGTAATGA TGAAGCCCCT GCTCTGGTCC AAGCTACCTG TGAACAGCGC 000160 000161 CCAGCGGGCC GGGCCCCCAA CCTCGCTCCT GAACGTACCC CCAAGCCCGC CGTGAGAATT CAGCGAAGAG TAAAGGCTGG 000240 000241 AGAAAGTTGC GTGTCTCAGG CTAAGCAGAG CAAAGTGGGG TGAGGGCTTC GCCGCTAGGA ACAGAGATGC CCTTAGGGAG 000320 000321 CCCCCTGATG GAAGAGCTCT CTGCTTAAGA AGGTCAGCAC GCCCTTACAC TCAGGTGAGA GGTTTTAGTT TGGGTGTTGA 000400 000401 AATAGAAGGA GAGAGAGTAT TCCTGCCCTT AGGGTTTTAC GGTCAATACA AGAGACAATT AGGGAGCATC TGCTGCGAGC 000480 000481 ACGCTCGCAC CACGAGGGTG ATTTAGGGAA GTGGAAAAGC AAGATACAGC CCAAACACCG AAGCTGGGGG GTAATTTCCA 000560 000561 GCTTCCCAAT CTTCCGTCTC GGTGTCTTTC ATCATCACAC CACTCCGCTG CCTGGGGTTT TCAGTTGCTT CTAATTTTTC 000640 000641 TACAGTTTGC ACACAAGTCC GCATTCAGTA TTCATGTGAC ACTCAGGCTG GAGTGGTGGT AAGGGACACG CAGGCAGTCT 000720 000721 TAGGAAGACT TAACCTGGAA ATTGATGTTT TAAAATCCCT TTCATTCACC TGAATTGGTC ACGTGTTCCC ATGAGCCTAG 000800 000801 ACGTTGCTAG AATTGGAGTA AATGTTCTGT CTAAACTTAC AGGGTTAATG AGACCCACCA GATACAGTTA AGGTCAAATT 000880 000881 TCAGATATTT CATGTAATGT CATTGCAGAA GCAGCCTGAT TCCATCATCA AGTAGCCTGA TGCCCTCTTT TATTTTCTGT 000960 000961 CCCCACCCCC ACCCCCCTCA ATCTGATTCC CTGCTATGCC TGCCGTCACC ATTGGCCAGT TTTACCACGT TTTTCAAGAT 001040 001041 CCAAGGCACA ATAGGCATAA AGTTATCCTG AAAAGGACAA GAGGAGTGTC AGAAGTAGGA ATGGCAGTCG AAGGAGCTTC 001120 001121 GTCTGGCAGC AGAAAGCCAA AATGACAGGC AAGCACAAAA TATGAGACAA AGCTATGCAT GAGCGAAATA TCAAACTTTC 001200 001201 ATCTTCTACC CACTTTTTTT TTTTTTTTTT GCTTAAAAAT AGGAAGACAG AATGTCTTGT CAAGGGTCAC CCCAGGAGGA 001280 001281 GGAGTAAATT CTCCAAAAAT CAGAACATAT TTTTATGATT TAATTAATGC AATTTCTCTC AATGTTTCTG TTTGTCATTT 001360 001361 GAGCATCCAC ATGATCAGAC CTGACATCTG CCTACATTTT ATTGGTCATC TTTGACTTCA GTTAAGAACC CTTTGCGTTT 001440 001441 TGCTTTTTGC TTTTTTTTCC CCCCAGCAGC ACACTGTAGT AAGTTTGGAA CAAGACACAC CTGAAATCAA GTCCCTGCTC 001520 001521 TGGGCTGGGT GATCTTAGAG GCAATCTCTT ACCTCATTCT ACTTTATTGT TCTCATAGGA AAAGTGGAAA TGAGGCCTTT 001600 001601 TACCCCAGGG TTGTTGAGAA GACAGGGGAG AAAAAGCACA TAAAAATGCA CCTTGTCGGG CGCAGTGGCT CACACCTGTA 001680 001681 ATCCTGCACT TTGGGAGTCT GAGGCAGGTG GATCGCTTGA GGCCAGGAGT TCAAGACCAG CCTGGCCAAC ATGAAAAATA 001760 001761 CATTAAAAAT AATGTCTCTA TTAAAAATAC AAAAATTAGC CAGGCATGGT GGTGCACGCC TGTAACCCAG CTACTCAGGA 001840 001841 GGCTGAGGCA CAAGAATCAC TTGAACCCAG GAAGCAGAAG CTACAGTGAG TCGAGATTGC ACCACTGCAC GCCAGCCTGG 001920 001921 GTGAAAGAGT GAGACCCTGT CTGAAAAAAA AAAAAAAAAA AAGCATTTTG CCTGGCACCC AGTAGATCCT CAATAAAGGT 002000 002001 CATGTCACTT CCTCTGTTTA TTTTGCTTCA TTTTACCCTG GCATGCTAGA GAAGATGCTG AAACTAGTTG TTCACAGTTG 002080 002081 TTACACTTGA AGCAGGAAGA CCCCTTACCA AAAATAACAT CTCCCTAGGG CATTTCTCAG AACTAAAATG GCAAAAACAT 002160 002161 TTGCATTTAC AAACAAGAAC AATTACTCTT TTGGCAGAAA GAACAAGGAG TCCAAAATTT GGTCCTCTAA CTGAGGCCCC 002240 002241 TACACCATTT GAGTCAGCTG ACTCAATTAC CCAGGGGTAT TTTTTTCCGG TGTTCATAGT GTATGAATTT CTGTTCCCTG 002320 002321 GCTGTCTCTT TGGTTGTCTC ACTTTCTTCA CCCCCTCTTC TTTCTCTTTT TCTTGACTCT TTTAATACTG AACAGCTTTT 002400 002401 TGTCTTCACT GCAAACAGAA GGGGTTAATG ACAGTGATGA TGAAGTTGTC ATAACTGACC TGCTGGATCC TGTTACTAAA 002480 002481 CACCATCCCC AGCCTGTAAT CATCACAAAG AACAGAGAAA ACAAATAGCA ACCCATTTGT ACTTAGCTAA TAATGTTCCC 002560 002561 TTGCAAATAA TTATGTCTCC CACCCCCAGA GGATTTAAAT GACTTGGGGC TCACGCTGTT TGTGAAAATA GACAAAACTC 002640 002641 CAGCGTTCCC ACAAGATTAA TAATGTTCCC TTTTCTTCTT TTCTATGCCT TTCCATCGTT GTAGGAGATG TTGCTGAGAT 002720 002721 GGGTGCATTA AAGTTTAGGC TTTCCAGAGT TTATATTGCT AACGACTTGA AAGGAAAAAA GCTAACTAGA GAACTGACTG 002800 002801 GTCTTATTTG TTTTAGATTT CGGGCTTTAC TAAGACTTCC TACACTCAAT CTCTGGACTG TAAATGCTGG GTGGGGTGGG 002880 002881 AGCTGGGAAT GTTATTCTGG GAAATTAATC ACAAATGAAA AGAAAATCAA CTCTAAGACT TCAATTACAA GATTTTTGAA 002960 002961 AATGGCAGAA CATGGCTGGC CTTCATTCAA GTCCGAATAT TTAAAGCAAT CCTTGCTAAG AAGAACTTGA TTTTATATAA 003040 003041 GGAGTCCCTT AAATACAGTT GCTTCTCAAG AAAACCAAAA AAAAAAAAAA A |
Predicted Small Protein
Name | NONHSAT084403_smProtein_1178:1414 |
Length | 79 |
Molecular weight | 8908.4275 |
Aromaticity | 0.128205128205 |
Instability index | 50.0385897436 |
Isoelectric point | 9.05731201172 |
Runs | 13 |
Runs residual | 0.0329893683552 |
Runs probability | 0.0460845460846 |
Amino acid sequence | MSEISNFHLLPTFFFFFCLKIGRQNVLSRVTPGGGVNSPKIRTYFYDLINAISLNVSVCH LSIHMIRPDICLHFIGHL |
Secondary structure | LLLLLLLLLLLHHHEEEEEELLLLLEEEELLLLLLLLLLLLEEHHHHHHHHHHLLLEEEE EEEEEEELLHHHHHHLLL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHHLLLLLLLLLLLLLL |
PiMo | oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTT TTTToooooooooooooo |