NONHSAT087031
Revision as of 00:21, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087031 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3520 nt |
Genomic location |
chr22+:42527914..42535343 |
Exon number |
3 |
Exons |
42527914..42528609,42532208..42532723,42533036..42535343 |
Genome context |
|
Sequence |
000001 ctctgttgcc caggccggag tgcagtggca ggatcatggc tcactgcagt ctcgacatca agtggacccc ctgcctccca 000080
000081 agtagctggg actacaggca ccacccagcc taatcctttt tttttttttt tttttttttt tttggagacg gagatttcct 000160 000161 cttgttgccc aggctggtgg ctcccctcca ttgtgcaatg atgcaatctc ggctcactac aaccttcacc tctaggcttc 000240 000241 aagcaattct cctgcctcag cctcctaagt agctgggatt acaggtgtgt gccaccacgt ctagcttttt gtattttcag 000320 000321 tagagatagg gtttcaccat gttggccagg ctagtcttga actcctgact tcaggtgatc cacccacctc aggctcccaa 000400 000401 agtgctggga ttataggcat gagccaccgc acccaatccc agctaatttt gtattttttg tagagacccg gttcttccaa 000480 000481 gttgtccagg ctggtcttga attcctgggg tgaagcgatc ctcccacctg ggcctcccaa agtgctggga ttacaggcct 000560 000561 gagccactgt gactacctga tacgtctctt ctctcttgct gctttcaaaa tcctgtcttt TGTGGGAGGG CAGCTGCCGA 000640 000641 GCTCTGGACT TCTATGGGAT CATCCACTGA GGACAGGAGG ACCGGGCCCT CTACAGGTCA CGACCCCCAG GAGACCTGGA 000720 000721 GGACTGAATG CTGCTGCCCC CAAGGAGGAG GCTGCTGTCT TATCCCAGGA GGGAGAGCAG GTGAAGTCCC CAGGGGAGGA 000800 000801 AGCACCTAGC CCCATTCCTG CTGAGCAGGA GGTGGCAGGT ACCCCAGACT GGGAGGTAAG GACAGCCCGG GGCTTCGACT 000880 000881 GAACGTCTCC AGCGTGGGTC CAACTGAGCA GCCATGGAGC ACTGCAGAGT GGGAGGCAGC AGGGCAGGGA GGCAGTGCTG 000960 000961 GAGGCTGGCT CAACCCCAAG ACCAGCAGGC CAAGCTGCCA TCCCAGGGGA GCGAGGACGT CTGTGCAGAG CTGAGAGGCA 001040 001041 GCAGCCATGT GTGAACAGAC TGGGCCTCAT CCTGGCCCCA CCGACTTTGT GTGGACAGAG CCTGTTTCCC TGTCTGTGCA 001120 001121 ACACAGAACC TGCCTGATCT CACTGCTGGA TCCCTCTTCT TCCTGCCAGG AAAATAAAAA GGTTCAAAAG GAAGTTGCTG 001200 001201 CGTATCCATC TGAGGCCTCT GAGGACAGCA AAGAGCAAAG GCCCTGGGAC CGGGTCTACG TGCCCATGAC AGAGCTCTGG 001280 001281 CTGGACTGGT TCTGAGCCTC TAACACCCCC AAGACTCAGA ACCGTGAAGA AAATCTTTCC AATAAATCCA AGAGTTGCTG 001360 001361 CTGCTATAGG CCAGGCTGCC ACCTTTCGGG GCCTCCGTCT TCAGACAAAC CCAGCCTGGC TTCATCCACA CTCCCTGTCC 001440 001441 CCACAGCTGC AGGAACAGCA CTTCCTGCCA CCGAGCCGTG TGACCACAGT GGATTGTCTC TGGAGGGGCC CAAGGGGGCC 001520 001521 CTGGCCACCC TTCTGACTGA CTCGGTGCCA GGGGACAGAC CAACGTCCCT CTCGTGCTGA CAGCCGGGCC GCACCCTGGC 001600 001601 ATGAGGGCAT TTACAGAAAT GCTGGCGGAA CTGCTGCCAG GGAGGCTGTA GGGTCCTCTG GCAAAAGAGG CCTCAGGTGG 001680 001681 CTCCTCAGAG TGTCTGTGGT TCTCTGTCCC AGGCTGTTCC CTAAGAAGGT CTGCCCAGGA CTCAGGTAAT CATATGCTCA 001760 001761 TTAGAAACTC TTGGGCACTG CCTGTGTGCC CAGCCCAGCC CATTATGTCG GTGAGGACAG ACGTGGAGGA CAGCAGTCCC 001840 001841 TGCCCTTGGT TGGGGCTCCA GGCCAGCAAG GGCCACAGCC CCAGAAGGCA GAGCAGGAAG ACAGGACTCG GGGCAGGTGA 001920 001921 AGCAGCCTTC TCGTTGGCAG AAGGGAAACA GAAGCCCggg gtggggaagg gtggggaagg gtggggaagg gtgggcccgg 002000 002001 ggtcacacgg ggtaatggca gagcaaggac tagggtcagg gtctctggct ctcagctgcc catgccacct cctccttctc 002080 002081 taccCGCCCC AGTGCCTTAT GGGTCCAAGG TTGACTCCTG TCCCTAGGGC AGGCCTGTGG GCCCTGCCTG ATCCCTACTG 002160 002161 GGAGGATGGT ACCTAGGGTT GGAGCCAAAC AAGTGTCCTC CTCCAGCGCC AGCCTGGCCC TGAGTGCAAA CTCGTCACTG 002240 002241 GTCAGGGGTC CGGACAGCAG CATCCCTGAG GGCCCAGAGA GGTGGCCAGT CCTGTGGTGA GGgtgagagg tgtcaacgtg 002320 002321 ctggcggtcc tcgctcgctc tcagcgcctc ctcggcctca gcttctgctc tgaccacact tgaggagccc ttcagcccag 002400 002401 cgctgcactg tgggagcccc tctctggact ggtggaggct ggagccggct ccctctgctt gcggggaggt atggagggag 002480 002481 aggcgtgtgc gggaacctgg gttgctcgcg ggccagcacc agttctgggt gggcaggggc tcagcgggcc ctgcactcgg 002560 002561 agcggccggc tggtgcctct ggccccaggc agtgaggggc ttagcacctg ggccagcagc tgcagagggg gcaccgggtc 002640 002641 ccccagtact gctggcctgc cggcgctcac cacacttgaa ttgtcgccag gcctcagtca cctccccgcg gggcagggct 002720 002721 caggacttgc agcctgccat gcccaagcct ccctacggtg ggctccctgc gaggcctgag cctcccggat gggtgcctcc 002800 002801 cactgctcca cggcacctgg tcccgtccac tgcccaaggg ctgaggagta caggtgcctg gtgtgggact agcaggcagc 002880 002881 tctgcctgtg gccctggcat aggatccact aggcgaagct ggctgggctc ctgagtcagg tggggacttg gagaactttt 002960 002961 atgtctagcc agaggattgt atatgcacca atcagcactc tgtgtctagc tccgggttcg tgcatgcacc aattagcact 003040 003041 ctgtatctag ctaatctggt ggggacttgg ggaaccttta tttctagcta aaagattgta aatacaccaa tcagcactct 003120 003121 gtgtctagct caaggtttgt aaacacacca gtcagcaccc tgtgtctaac tcaaggtttg taaacgcacc aatcagtgct 003200 003201 ctctgtctac tctatctagc taatctagtg gggactggga caacctttat gtctagctaa gggattgtaa atacaccatt 003280 003281 cagcactctg tgtctagctc aaggtttgta aatataccaa tcagtactct gtgtctagct cagggattgt aaatgcacca 003360 003361 atcagctctc tgtaagtgga ccaatccact gtctgtaaaa tgggccaatc agcaggatgt gggtgggggt cagataaggg 003440 003441 aataaaagca ggctgcctga agtagcagcg gcaacctggt tgccatcatt cttttgctgt ttgcagtaag tcttgctgct 003520 |
Predicted Small Protein
Name | NONHSAT087031_smProtein_1046:1294 |
Length | 83 |
Molecular weight | 9453.4854 |
Aromaticity | 0.0975609756098 |
Instability index | 55.362195122 |
Isoelectric point | 4.66192626953 |
Runs | 13 |
Runs residual | 0.0226348854398 |
Runs probability | 0.0247442012148 |
Amino acid sequence | MCEQTGPHPGPTDFVWTEPVSLSVQHRTCLISLLDPSSSCQENKKVQKEVAAYPSEASED SKEQRPWDRVYVPMTELWLDWF |
Secondary structure | LLLLLLLLLLLLLLEEELLEEEEEEEEEEEEEELLLLLLHHHLHHHHHHHLLLLLLLLLL LLLLLLLLEEEELLLEEELLLL |
PRMN | - |
PiMo | - |