NONHSAT087031

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT087031

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3520 nt

Genomic location

chr22+:42527914..42535343

Exon number

3

Exons

42527914..42528609,42532208..42532723,42533036..42535343

Genome context

Sequence
000001 ctctgttgcc caggccggag tgcagtggca ggatcatggc tcactgcagt ctcgacatca agtggacccc ctgcctccca 000080
000081 agtagctggg actacaggca ccacccagcc taatcctttt tttttttttt tttttttttt tttggagacg gagatttcct 000160
000161 cttgttgccc aggctggtgg ctcccctcca ttgtgcaatg atgcaatctc ggctcactac aaccttcacc tctaggcttc 000240
000241 aagcaattct cctgcctcag cctcctaagt agctgggatt acaggtgtgt gccaccacgt ctagcttttt gtattttcag 000320
000321 tagagatagg gtttcaccat gttggccagg ctagtcttga actcctgact tcaggtgatc cacccacctc aggctcccaa 000400
000401 agtgctggga ttataggcat gagccaccgc acccaatccc agctaatttt gtattttttg tagagacccg gttcttccaa 000480
000481 gttgtccagg ctggtcttga attcctgggg tgaagcgatc ctcccacctg ggcctcccaa agtgctggga ttacaggcct 000560
000561 gagccactgt gactacctga tacgtctctt ctctcttgct gctttcaaaa tcctgtcttt TGTGGGAGGG CAGCTGCCGA 000640
000641 GCTCTGGACT TCTATGGGAT CATCCACTGA GGACAGGAGG ACCGGGCCCT CTACAGGTCA CGACCCCCAG GAGACCTGGA 000720
000721 GGACTGAATG CTGCTGCCCC CAAGGAGGAG GCTGCTGTCT TATCCCAGGA GGGAGAGCAG GTGAAGTCCC CAGGGGAGGA 000800
000801 AGCACCTAGC CCCATTCCTG CTGAGCAGGA GGTGGCAGGT ACCCCAGACT GGGAGGTAAG GACAGCCCGG GGCTTCGACT 000880
000881 GAACGTCTCC AGCGTGGGTC CAACTGAGCA GCCATGGAGC ACTGCAGAGT GGGAGGCAGC AGGGCAGGGA GGCAGTGCTG 000960
000961 GAGGCTGGCT CAACCCCAAG ACCAGCAGGC CAAGCTGCCA TCCCAGGGGA GCGAGGACGT CTGTGCAGAG CTGAGAGGCA 001040
001041 GCAGCCATGT GTGAACAGAC TGGGCCTCAT CCTGGCCCCA CCGACTTTGT GTGGACAGAG CCTGTTTCCC TGTCTGTGCA 001120
001121 ACACAGAACC TGCCTGATCT CACTGCTGGA TCCCTCTTCT TCCTGCCAGG AAAATAAAAA GGTTCAAAAG GAAGTTGCTG 001200
001201 CGTATCCATC TGAGGCCTCT GAGGACAGCA AAGAGCAAAG GCCCTGGGAC CGGGTCTACG TGCCCATGAC AGAGCTCTGG 001280
001281 CTGGACTGGT TCTGAGCCTC TAACACCCCC AAGACTCAGA ACCGTGAAGA AAATCTTTCC AATAAATCCA AGAGTTGCTG 001360
001361 CTGCTATAGG CCAGGCTGCC ACCTTTCGGG GCCTCCGTCT TCAGACAAAC CCAGCCTGGC TTCATCCACA CTCCCTGTCC 001440
001441 CCACAGCTGC AGGAACAGCA CTTCCTGCCA CCGAGCCGTG TGACCACAGT GGATTGTCTC TGGAGGGGCC CAAGGGGGCC 001520
001521 CTGGCCACCC TTCTGACTGA CTCGGTGCCA GGGGACAGAC CAACGTCCCT CTCGTGCTGA CAGCCGGGCC GCACCCTGGC 001600
001601 ATGAGGGCAT TTACAGAAAT GCTGGCGGAA CTGCTGCCAG GGAGGCTGTA GGGTCCTCTG GCAAAAGAGG CCTCAGGTGG 001680
001681 CTCCTCAGAG TGTCTGTGGT TCTCTGTCCC AGGCTGTTCC CTAAGAAGGT CTGCCCAGGA CTCAGGTAAT CATATGCTCA 001760
001761 TTAGAAACTC TTGGGCACTG CCTGTGTGCC CAGCCCAGCC CATTATGTCG GTGAGGACAG ACGTGGAGGA CAGCAGTCCC 001840
001841 TGCCCTTGGT TGGGGCTCCA GGCCAGCAAG GGCCACAGCC CCAGAAGGCA GAGCAGGAAG ACAGGACTCG GGGCAGGTGA 001920
001921 AGCAGCCTTC TCGTTGGCAG AAGGGAAACA GAAGCCCggg gtggggaagg gtggggaagg gtggggaagg gtgggcccgg 002000
002001 ggtcacacgg ggtaatggca gagcaaggac tagggtcagg gtctctggct ctcagctgcc catgccacct cctccttctc 002080
002081 taccCGCCCC AGTGCCTTAT GGGTCCAAGG TTGACTCCTG TCCCTAGGGC AGGCCTGTGG GCCCTGCCTG ATCCCTACTG 002160
002161 GGAGGATGGT ACCTAGGGTT GGAGCCAAAC AAGTGTCCTC CTCCAGCGCC AGCCTGGCCC TGAGTGCAAA CTCGTCACTG 002240
002241 GTCAGGGGTC CGGACAGCAG CATCCCTGAG GGCCCAGAGA GGTGGCCAGT CCTGTGGTGA GGgtgagagg tgtcaacgtg 002320
002321 ctggcggtcc tcgctcgctc tcagcgcctc ctcggcctca gcttctgctc tgaccacact tgaggagccc ttcagcccag 002400
002401 cgctgcactg tgggagcccc tctctggact ggtggaggct ggagccggct ccctctgctt gcggggaggt atggagggag 002480
002481 aggcgtgtgc gggaacctgg gttgctcgcg ggccagcacc agttctgggt gggcaggggc tcagcgggcc ctgcactcgg 002560
002561 agcggccggc tggtgcctct ggccccaggc agtgaggggc ttagcacctg ggccagcagc tgcagagggg gcaccgggtc 002640
002641 ccccagtact gctggcctgc cggcgctcac cacacttgaa ttgtcgccag gcctcagtca cctccccgcg gggcagggct 002720
002721 caggacttgc agcctgccat gcccaagcct ccctacggtg ggctccctgc gaggcctgag cctcccggat gggtgcctcc 002800
002801 cactgctcca cggcacctgg tcccgtccac tgcccaaggg ctgaggagta caggtgcctg gtgtgggact agcaggcagc 002880
002881 tctgcctgtg gccctggcat aggatccact aggcgaagct ggctgggctc ctgagtcagg tggggacttg gagaactttt 002960
002961 atgtctagcc agaggattgt atatgcacca atcagcactc tgtgtctagc tccgggttcg tgcatgcacc aattagcact 003040
003041 ctgtatctag ctaatctggt ggggacttgg ggaaccttta tttctagcta aaagattgta aatacaccaa tcagcactct 003120
003121 gtgtctagct caaggtttgt aaacacacca gtcagcaccc tgtgtctaac tcaaggtttg taaacgcacc aatcagtgct 003200
003201 ctctgtctac tctatctagc taatctagtg gggactggga caacctttat gtctagctaa gggattgtaa atacaccatt 003280
003281 cagcactctg tgtctagctc aaggtttgta aatataccaa tcagtactct gtgtctagct cagggattgt aaatgcacca 003360
003361 atcagctctc tgtaagtgga ccaatccact gtctgtaaaa tgggccaatc agcaggatgt gggtgggggt cagataaggg 003440
003441 aataaaagca ggctgcctga agtagcagcg gcaacctggt tgccatcatt cttttgctgt ttgcagtaag tcttgctgct 003520
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Predicted Small Protein

Name NONHSAT087031_smProtein_1046:1294
Length 83
Molecular weight 9453.4854
Aromaticity 0.0975609756098
Instability index 55.362195122
Isoelectric point 4.66192626953
Runs 13
Runs residual 0.0226348854398
Runs probability 0.0247442012148
Amino acid sequence MCEQTGPHPGPTDFVWTEPVSLSVQHRTCLISLLDPSSSCQENKKVQKEVAAYPSEASED
SKEQRPWDRVYVPMTELWLDWF
Secondary structure LLLLLLLLLLLLLLEEELLEEEEEEEEEEEEEELLLLLLHHHLHHHHHHHLLLLLLLLLL
LLLLLLLLEEEELLLEEELLLL
PRMN -
PiMo -