NONHSAT087160
Revision as of 00:22, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087160 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1093 nt |
Genomic location |
chr22+:44883672..44887538 |
Exon number |
2 |
Exons |
44883672..44884461,44887236..44887538 |
Genome context |
|
Sequence |
000001 tgcagtgagc caagattatg ctactgcaAG AATCTTCCTC TATGTGGTCT GGTGACTGTC GCAATGCTAT TTTGTCCTAC 000080
000081 GTGCTTTGTT TGTTTCTGCA GCTGTCTCCT GCAGGGCATC TCTCCTTCCT GGACTGGGGT CTGTGTGTCT ATGTGTTGTG 000160 000161 GTTCCCTGGT TGTATCCACC CTGGTCCTCC AGGGCACACA GGGTGAAGAA GCTCTGTCTT CAGAGCACTG TGCACACCAC 000240 000241 TCGTGCCATG CAGGATGCAC CCTGGACTCA TGTCAATGAC TAGCTTCTGT CCCTGGCCAT GGGGGACCAT TTTCTGGCCA 000320 000321 CAAATCCTGG CAAGATTTCC AGCCCCCACC CATGGGCAGA CGGCACGTGG TTCCCAGTTA TCGCTTGCAT TTTAGTTTCG 000400 000401 GGGAGATGTT TTCACTTCTG GTCCATAGAA ATGTCCTTTC ATTATTTTCA AATGCTCCAT TCATACAGCT CTTGTGTGTG 000480 000481 TCTGTGTGTG TGGTGTTATT GATGTTTTCA CTTCGAGTGC ATGGACTTGA AGAGGGAGGT TTCTGTATAA ACTCAATCTt 000560 000561 gacctagaaa attgtcttca gcactccaag ccgattttct catctgtcaa gtggggctgt tatgaggatg aactgagata 000640 000641 gactcatcag caagtagcac agtcgaccac agagggaaca cccaTGGAGC CCATCGAGTC TGCTTTCTGT TAGTGCTGGG 000720 000721 AGCAGGACGA GGGTGTCACC CATCAGTCCC GGCAACAGCA GTGCTGGGGA AGTTCCACAA GTGACCTAAG aaaaaaaaaa 000800 000801 aaaaaaaaaa aTTATAAAAC CCAAGTCAGC TAAAATAGGG AAGTACTGGG CAAGACAAAT GGATCAACTG AATAAACAGT 000880 000881 GGGAAAGTTG GTCCTACGGT AGATAAGATT TCCCTGCGTG TGAAGGAAAG AACACACGTG ACCAAGGGAG AGAAATACTT 000960 000961 ATTAATAACT GGACTCAGGG TATTTAAATC TTTGAAAGAC AGTCTATTTA GAGCCTCCTC TCACATTACA TGCCAAATTA 001040 001041 ATCCCAGAAA TAACTGTGTA TTAATCTAGA GGGGGAAGAA AGACCTGAAG TTT |
Predicted Small Protein
Name | NONHSAT087160_smProtein_17:205 |
Length | 63 |
Molecular weight | 6822.9075 |
Aromaticity | 0.129032258065 |
Instability index | 56.0451612903 |
Isoelectric point | 5.71136474609 |
Runs | 7 |
Runs residual | 0.0407373271889 |
Runs probability | 0.0552653493831 |
Amino acid sequence | MLLQESSSMWSGDCRNAILSYVLCLFLQLSPAGHLSFLDWGLCVYVLWFPGCIHPGPPGH TG |
Secondary structure | LLLLLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLHHHLLLLLEEEEEELLLLLLLLLLLL LL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL LL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooooooooooo oo |