NONHSAT087261
Revision as of 00:22, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087261 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1608 nt |
Genomic location |
chr22-:46435787..46440748 |
Exon number |
4 |
Exons |
46435787..46436932,46438454..46438520,46439443..46439579,46440489..46440748 |
Genome context |
|
Sequence |
000001 CGGCCGCCCC CGAAGCGCTG CTGTCACCCC GGCCGCGCCC CCCAACTTTC TGCACAGTCG CGGAGCTGGA AGTTTCCGGG 000080
000081 CTTCGCGGAC ACGCTGGGCT GGGTTTCAGT CGCGGCTCCG AGGTTGGCAA CAAAGAGGGA AAGAAGGAGG AAAAGCAGGC 000160 000161 CGGGGAGGGG AGGAAGAGAA CCGCGCGGAG GCCGCGGCGC CGAGAGCCCC AGAACTTCCA ATTCTACCCA GAAGCTTTTT 000240 000241 TCGTCGTGTT TTTCTCTTAG ACATGATCCT CTCTGAGGTT GGTCCTGGGC TTCCATACGT GATTCATGGA AGAGGTCTCA 000320 000321 GCCCCAAGAG CCCCTGAGGG TACTGTCCAC TCCCCCTGGA AACTTCCAGA ACCTGACGTG GGGCTGAAGA CATAGAGGCT 000400 000401 CTGAGAGTTA CATAATTGAT TCTGACTTTG GCTGTTGGTC AACAGTGTCA TAAGGTAAAA TAAGGCTGTT GTAGAATCTG 000480 000481 CTCAGCCAGG GAGGGGAAAG GAGTCGGCAA TCAGGTCTCC TCCTGGGCAC CTTTGTGAGG CCAGCTGGCG AGAGTGGGGG 000560 000561 GTGACACTGA GGTCCCAGCA GCTCCAAATG CAGGCAGAGC CCTGTCCTCA GAGAAGGTCA CAGCCTAGCC AAGCCCAGCC 000640 000641 AGGTGGATGG GCCCACGGAA CGCACAGGAA CCTGGAACGG AGGTTGAAAG CAGGAAGCAC AGTCTGTGAC TCCCCAGCCC 000720 000721 ACTCTGCATT CGACCACTTG GGGCCCAGAA GCTTCAGGAA AGGTGCACAA GGTCACTGGG TCCCAGTACT CCCAACAGGA 000800 000801 AGGTCTGGTC CAGGGACAGG GCTCTTCCCG ACTCCCCTTA GCCACACGCA CCAGAAGTTC TGCAGTGCCC AGTGGGCATA 000880 000881 GCAGTCCCCA AGAATGACCC AGCACTGAAG CTGAGCCAAA GAACTTGGGG AGCGAGCCAC ACCCCCTCAC TCCCTCTTCG 000960 000961 CCTGCTCCAG ACTTGCCAGG CGGTTGCTTT TCGTGGGAAC CGGGATGTCC TCACCACCCT GTCCAGGGCC CAGCCCCATG 001040 001041 TCCCTGGCCT GCTACAGCTG GAAAAAAAAA AGAGAGATGT TTGTTTTTAT TTGTTTATAA AAAGAAAAGT GTTATATATA 001120 001121 TAACATATTA TACCTCATGA ATACATACAA TTATTTGTCA ATTAACAATA AAGAAAAATA CAGCAAGCAA AAAAGACTCT 001200 001201 CTTCCACAAA AATAGTGTTC ATTACAGAAA AGTACAAAAA AAAAAAAAAA AAACTAAGAG GATATTTAGA ATTAAGAAAA 001280 001281 AACTAAGAGG GTATTTAGAA TTAAAAAATA AAAAGAAAAC AATTACCCAT GAGGTAATTA CTGAATGCAT TTGGTTGAAA 001360 001361 GTCCTTCTGC TATATTTTCC AAACTGTATG TGTATATATG TGCGCATGCA TATATGTGTT TGTGTGTGTG TACACATATC 001440 001441 TATATGAATG GACCATATCG TAAGTTATAA ATGCATACAT ATATTCATGT ATATATAATC ATTAGATCAT ACTATAGGTT 001520 001521 ATTTTACAGT CTTTTTGTTG AATACGTTGT GAGCATTTTA TGTCATTATT TTCTACAAGA TTTGAAAAAT AAAGTATAAA 001600 001601 TACCAGTT |
Predicted Small Protein
Name | NONHSAT087261_smProtein_587:880 |
Length | 98 |
Molecular weight | 10529.6718 |
Aromaticity | 0.0721649484536 |
Instability index | 58.3721649485 |
Isoelectric point | 10.7910766602 |
Runs | 11 |
Runs residual | 0.0181366933944 |
Runs probability | 0.0278058807471 |
Amino acid sequence | MQAEPCPQRRSQPSQAQPGGWAHGTHRNLERRLKAGSTVCDSPAHSAFDHLGPRSFRKGA QGHWVPVLPTGRSGPGTGLFPTPLSHTHQKFCSAQWA |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLEEELLLLLLLLLLLLLLLLLLLL LLEEEEELLLLLLLLLLLLLLLLLLLLHHHHHLLEEL |
PRMN | - |
PiMo | - |