NONHSAT087871
Revision as of 00:25, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087871 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1569 nt |
Genomic location |
chr3-:10055932..10068041 |
Exon number |
3 |
Exons |
10055932..10057210,10065244..10065431,10067725..10068041 |
Genome context |
|
Sequence |
000001 CCCATCGTTA TCACTCTTCG TAGACATGAT CCGCCACTAC GTGTCCATCC TGCTGGAGAG CGACAAGAAG CTCACCCAGG 000080
000081 AACAAGTATC TGACAGGGGA CGAGGCACCC ACAGTCCCTC TCCCATAAGC CTGCCAAGAA GATTGATGTG GCCCGTGTAA 000160 000161 CCTTTGACCT GTACAAGCTG AACCCACAGG ACTTCATTGG CTGCCTGAAC ATGAAGGCGA CTTTTTATGA TACGTACTCC 000240 000241 CTTTCCTATG ATCTGCACTG CTGTGGGGCC AAACGCATCA TGAAGAGCTC GAGGCTAATG GAGTCAAAGC AGCTGTGGTC 000320 000321 AGTGAACAGG AAAAGGCAGC CTTTGATGAG GCTGGGGGGC TGGGGAGGGA AGATTCCAAA CAGCAAAGGA GCTTGAGCCT 000400 000401 CAGTAGGGCC TGGCGATCCT AGTGGGAGAA TGGCCTTTCC TGGAGACCCC CCCGCACAGC CAGGAGCAGC TGTCGTCAAG 000480 000481 GTGGGCTGTG TCCCAGCCCC TCCAGCTCAG CCTTTTCATC TGTTCAGGCT GGTGCTCACG AGTGCACAGG ACGCCTTTCA 000560 000561 GAAGGAGGAT TCTAAATCCC GGGGGTCTGT AATGGCACAG CCACATGTCT GAGCCCAAAA CAAGAGAACC ACATGTGTTT 000640 000641 TTGCCACACT TCTTGCCAGT GCTGTCCATA TTTGTGTACA TAATTTTTTG TTTCTTTTCT TTGAGACAGA GTCTCACTCT 000720 000721 TGTCACCCAG GCTGGAGTGC AGTGGCACGA TCTCAGCTCA CTGCAACCTC TGCCTGCTGG GTTCAAGCAA TTCTTCTGCC 000800 000801 TCAGCCTCCC AAGTAGCTGG GATTACAGGC ACCCACCACC ACGCCCAGGT AATTTTTATA TTTTTCATAG AGATGGGGTT 000880 000881 TCGCCATATT GGCCAGGCTG GTCTCAAACT CCTGACCTCA GGTGATCCAC CTGCCTCAGC CTCCGAAAGT GCTGGGATTA 000960 000961 CAGGCGTGAG ACACCACACC CGGCTCTTGT GCACGTAATT CTATTTTATT TGAGATGGAG TCTTGCTCTG TTGCCCAGGC 001040 001041 TGGAGTGCAG TGGCATGATC TCGGCTCACT GCAACCTCCG CCTCTCAGGC TCAAGAGATT CTTGTGCCTC AGCCTTCCAG 001120 001121 GTAGCTGGGA CTGTGCACCA CCATGCTGGG CTAATGTTTG TATTTTTAGT AGAGTTGGGG TTTCACTTAG CCAGGCTGGT 001200 001201 CTCGAACTTC TGGCCTCAAA AGATCTGCCC GCCTCGGCTT CTCAAAGTGC CTTGGATTCC CAAAGTGCTG GGATTACAGG 001280 001281 TGTGAACCAT CATGCCTGGC CTGTGCACAT CATTTCAATA ACTGATATTT TGAAAACATT GTTTATTGAC ATAATTTATG 001360 001361 TACAATAAAA TGTATTATTT ACAAGTATGT CTTTCAATAA GTTTTGGCAA ATTTATACAG TTATGTAACC ACCATTTCTG 001440 001441 GCAAACCAGA AAGCTGCCAT CTGTCCCTTT ATAGTCATGT AAATAGACTT TTCTAAAATG TCATGTAAAT AGAATGATAT 001520 001521 ATCTTAAAAA TTTTTATTTC TATTTTTGTA AATTAAAAAA AGTATTTAG |
Predicted Small Protein
Name | NONHSAT087871_smProtein_872:997 |
Length | 42 |
Molecular weight | 4244.8147 |
Aromaticity | 0.0243902439024 |
Instability index | 46.487804878 |
Isoelectric point | 9.49383544922 |
Runs | 9 |
Runs residual | 0.0435433188688 |
Runs probability | 0.02050089305 |
Amino acid sequence | MGFRHIGQAGLKLLTSGDPPASASESAGITGVRHHTRLLCT |
Secondary structure | LLLEEEHHHHHEEELLLLLLLLLLLLLLLEEELLLLEEEEL |
PRMN | - |
PiMo | - |