NONHSAT088308

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT088308

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1538 nt

Genomic location

chr3+:13691765..13712283

Exon number

4

Exons

13691765..13692333,13693344..13693490,13695676..13695787,13711574..13712283

Genome context

Sequence
000001 acagaaacag acacaaccat gttggcagtc actgcaatga tgaggcagac acagggggct gtggaaactc aagaggggcc 000080
000081 attatagtgg catcagggaa ggcttcctgg aggaggtgtt gcctccagtg ggttttgacg tgcagcagga atcacccagc 000160
000161 cggagatcag ggcaggcact gcaggcagca tgctcaaagg cacgaaggAG TGAGGTGGTG GGGGAGCAGC GGAAGTTCCT 000240
000241 AGCGCAGCGT GGGGGTGCTC TGTGCACAGA TAAGTTGCGG GCCGCGGGAA ACAGGACCCT GGGGGGCCCC CTAGAGCCTC 000320
000321 GCGGAGCGGC TTGCAGAGGA GCCTCGGGGC CACGGCGTGT GTGCAGCGAC ACCTGGCGGT GGCATGCGGA ACTGCGGACG 000400
000401 GCTGCGCAgg agcggacagc ggagaggcgg tactgaccgg tgcgaggcgg tgctgaccgg tgcgggccgg tgcgggccag 000480
000481 tgcaggccag gcccggccgg ggcgaggcag gTGGCCAGGT CCGAGGACCG CGTCGCACAG CAGCTTTCAG GACCtggaga 000560
000561 gaaatcgaga cacagaaact gaggcccaga agagctgaat atttggccca ggccacacag ggagtCCAGC CACGGGTGAT 000640
000641 GAGGGGCTGA GGATCGGGGA GGGACAGGAA ACCTGGCCTT TCTGAGCCTT GCTGTCCTTA TCTGCTGCGT CAGGAGgtct 000720
000721 ctcctcagat gtcacctcgt cagagtggcc tgtgctgact gccatatcta caataccctt cccaacgcct ggcatccgcc 000800
000801 tcctcactct tgtatgagtg tcttcaagAC CCTGATTCCT AGCCCTGGAG GCCATCCAGA GCATCTCATC CAGGGAGCCG 000880
000881 AGAGGTCCTT CCACCACCCC GCTGGGGTCC AGCGCAGCTG GGCCAGGAGA AGGGTGGTAC ATCACTCctg cgagtcgaag 000960
000961 gcgagacagt gtgtgaatgg ggcctggact gcccaattcc ctctaccaaa gcaactagaa ccttcttctg cattaggtga 001040
001041 tgggtacctg cgtgagctgt catttgaaga cagggttcca gagcacaaac aaaTTGGAGC CCCTGGTCCT CTCAGCTGGC 001120
001121 ATCTGTGGAT TTGGCCTGCC TGGcgggcca ggccaatcag agaagagaat gccctattgg gcacagtgat tggggctctg 001200
001201 gcatggtcac atgacatgag acaagccaat aagcatggat cctgagattc tgcttggcgt ctcctgggct gtacttcctg 001280
001281 ctttgtgctg ggattggggc catgcggctg taagtccaga gctactgcag gcctcttgcc actgtgggga acccagccta 001360
001361 ggatgaagca caggaatgga aacagctgaa agaagcaaga cacagggtcc tgaccacatc tgttggagcc tggatccaac 001440
001441 cttgcctgga tctgcaacca ctactgagct tttcatgtac ttggtgccaa tatattccat gtctccattt ttaaaagtaa 001520
001521 atttgagttg gatgtcct
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Predicted Small Protein

Name NONHSAT088308_smProtein_383:649
Length 89
Molecular weight 9789.0826
Aromaticity 0.0340909090909
Instability index 47.1147727273
Isoelectric point 11.915222168
Runs 14
Runs residual 0.0277272727273
Runs probability 0.0434930729049
Amino acid sequence MRNCGRLRRSGQRRGGTDRCEAVLTGAGRCGPVQARPGRGEAGGQVRGPRRTAAFRTWRE
IETQKLRPRRAEYLAQATQGVQPRVMRG
Secondary structure LLLLLEELLLLLLLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLEELLLLLLLLEEEHHH
HHHLLLLHHHHHHHHHHHLLLLLLEELL
PRMN -
PiMo -