NONHSAT088308
Revision as of 00:26, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT088308 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1538 nt |
Genomic location |
chr3+:13691765..13712283 |
Exon number |
4 |
Exons |
13691765..13692333,13693344..13693490,13695676..13695787,13711574..13712283 |
Genome context |
|
Sequence |
000001 acagaaacag acacaaccat gttggcagtc actgcaatga tgaggcagac acagggggct gtggaaactc aagaggggcc 000080
000081 attatagtgg catcagggaa ggcttcctgg aggaggtgtt gcctccagtg ggttttgacg tgcagcagga atcacccagc 000160 000161 cggagatcag ggcaggcact gcaggcagca tgctcaaagg cacgaaggAG TGAGGTGGTG GGGGAGCAGC GGAAGTTCCT 000240 000241 AGCGCAGCGT GGGGGTGCTC TGTGCACAGA TAAGTTGCGG GCCGCGGGAA ACAGGACCCT GGGGGGCCCC CTAGAGCCTC 000320 000321 GCGGAGCGGC TTGCAGAGGA GCCTCGGGGC CACGGCGTGT GTGCAGCGAC ACCTGGCGGT GGCATGCGGA ACTGCGGACG 000400 000401 GCTGCGCAgg agcggacagc ggagaggcgg tactgaccgg tgcgaggcgg tgctgaccgg tgcgggccgg tgcgggccag 000480 000481 tgcaggccag gcccggccgg ggcgaggcag gTGGCCAGGT CCGAGGACCG CGTCGCACAG CAGCTTTCAG GACCtggaga 000560 000561 gaaatcgaga cacagaaact gaggcccaga agagctgaat atttggccca ggccacacag ggagtCCAGC CACGGGTGAT 000640 000641 GAGGGGCTGA GGATCGGGGA GGGACAGGAA ACCTGGCCTT TCTGAGCCTT GCTGTCCTTA TCTGCTGCGT CAGGAGgtct 000720 000721 ctcctcagat gtcacctcgt cagagtggcc tgtgctgact gccatatcta caataccctt cccaacgcct ggcatccgcc 000800 000801 tcctcactct tgtatgagtg tcttcaagAC CCTGATTCCT AGCCCTGGAG GCCATCCAGA GCATCTCATC CAGGGAGCCG 000880 000881 AGAGGTCCTT CCACCACCCC GCTGGGGTCC AGCGCAGCTG GGCCAGGAGA AGGGTGGTAC ATCACTCctg cgagtcgaag 000960 000961 gcgagacagt gtgtgaatgg ggcctggact gcccaattcc ctctaccaaa gcaactagaa ccttcttctg cattaggtga 001040 001041 tgggtacctg cgtgagctgt catttgaaga cagggttcca gagcacaaac aaaTTGGAGC CCCTGGTCCT CTCAGCTGGC 001120 001121 ATCTGTGGAT TTGGCCTGCC TGGcgggcca ggccaatcag agaagagaat gccctattgg gcacagtgat tggggctctg 001200 001201 gcatggtcac atgacatgag acaagccaat aagcatggat cctgagattc tgcttggcgt ctcctgggct gtacttcctg 001280 001281 ctttgtgctg ggattggggc catgcggctg taagtccaga gctactgcag gcctcttgcc actgtgggga acccagccta 001360 001361 ggatgaagca caggaatgga aacagctgaa agaagcaaga cacagggtcc tgaccacatc tgttggagcc tggatccaac 001440 001441 cttgcctgga tctgcaacca ctactgagct tttcatgtac ttggtgccaa tatattccat gtctccattt ttaaaagtaa 001520 001521 atttgagttg gatgtcct |
Predicted Small Protein
Name | NONHSAT088308_smProtein_383:649 |
Length | 89 |
Molecular weight | 9789.0826 |
Aromaticity | 0.0340909090909 |
Instability index | 47.1147727273 |
Isoelectric point | 11.915222168 |
Runs | 14 |
Runs residual | 0.0277272727273 |
Runs probability | 0.0434930729049 |
Amino acid sequence | MRNCGRLRRSGQRRGGTDRCEAVLTGAGRCGPVQARPGRGEAGGQVRGPRRTAAFRTWRE IETQKLRPRRAEYLAQATQGVQPRVMRG |
Secondary structure | LLLLLEELLLLLLLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLEELLLLLLLLEEEHHH HHHLLLLHHHHHHHHHHHLLLLLLEELL |
PRMN | - |
PiMo | - |