NONHSAT088374
Revision as of 00:26, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT088374 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1876 nt |
Genomic location |
chr3-:14984488..14991070 |
Exon number |
2 |
Exons |
14984488..14987661,14989520..14991070 |
Genome context |
|
Sequence |
000001 GTCGCTCACG AGGTCGCGCC TCGCACCCGC CTTCCTCCTT TTCTTTTACC CTCCCCTTCA GAAAAAACGG CGGTTGGGCT 000080
000081 GCGACGGCCG CCAAAGGCGG ACTAGAAGCG GAGGGGTGAA AATCCCGGCA GAGAAGGAAG AAGGGACTGC AGGCGGGAGG 000160 000161 AGGAGGAGGA TAAGGAGGAA GGGAGCCCGC CCAGCCGGAG CCATCTCCGT CGAGAACAAA ATGGCGGCGC TGGCGGAGGG 000240 000241 CCAACTATAA GGCGGGGCCG CGGCCATTCC CCCTCCACCC CCACCCTTGC GCCGGCCGGG CCGGTCAGGG GGAACCCGCT 000320 000321 CGCTTCGCCC GGCCGCGGGC GGGGAGGGGA GGGGAGCGGC CCGGCCCACT ATGCAAAGCG CCGGGCGCCG CCGCCGCCAC 000400 000401 CCCGTGGCAA AGAATATGCT TTTTGTCTAA TGATGTTAGA TAAAAAGCAA ATTTGGAGCA GTTTTCTTAT TCGAGTTCAA 000480 000481 AATGGTTCAT AAAGCAGCGA AGACAACTCA AAACATCAGT AACACATTTG GCCCAGGAAC TGCTAACAAA CATACAGTGC 000560 000561 AGTGGTGGCT TAAGAAGTTT TGCAAGGAAG AGAGCCTTGA AGATGAGGAA CGTGATATGG GCCATGGGAA GTTGACAACG 000640 000641 ACCAATTGAG AGCAATCATT GAACTACATG AAAAATTACA GAAGAACTCA GCGTTGACTA TTCTACGGTC ATTAGGGTCG 000720 000721 TTCAGCATTC GAAGCAAATT GGAAAGGTGA AAAAGCTTGA TAAGTGGGTG CCTCATGAGC TGAGCGGAAA TCAAAACTAT 000800 000801 CGTTTTGAAG TGTAGTCTTC TTTTATGCTA CGCAACAACA AACCATTTCT CAATCGGATT GTGACATGTA ATGAAAAGTG 000880 000881 AATTTTATAC AACAACCAGC TCAGTGGTTG GACCAAGAGG CAGCTCCAAA GCAGTTCCCA AAGCCAAACT TGCACCAAAA 000960 000961 AAAAGGTCAT GGTCACTGTT CGGTGGTCTG CTGCCCATCT GATCCACTAC AGTTTTCTGA ATCCTGGTGA AACCATTACA 001040 001041 TCTGAGAAGT ATGCTCAGCA AATTGGTAAG ATGCACCGAA AACTGCAATA CCTGCTGCCT GCATTGGTCA ACAGAAAGGG 001120 001121 CCCAATTCTT CTCCACGACA ACACCTGACT GCGTGTCGCA CAACCAGTGC TTCAAAAGTT GAAGGAATTG GGCTACAAAG 001200 001201 TTTTGCCTCA TCCACCATAT TCACCTGACC TTTCGCCAAC TGACTACCAC TTCTGCTAGC ATCTTGACAA CTTTTTGCAG 001280 001281 GGAAAACACT TCAGCATGGT GCAGAAAATG CTTTCCAAGA GTTCGTCAAA TCCTGAAGCA CGGATTTTTA TGCTACAGGA 001360 001361 ATAAACAAAC ATTTCTCATT GGCAAAAATG TGTTGATTGT AATGGTTCCT GTTTTGATTA ATAGAATATG TTTTAGCGTA 001440 001441 GTTACAATGA TTTAAAATTC GCAGTCTGGA AATTTAATTT TTGCATCAAC CTAATATTTC TATGGTAAAT CCTTGCAAAC 001520 001521 ATGGAAACAA TGCATTTGGC CCAGTGCTTT GTGGTTGTGT ACTCTTTTTC TTTGTTTTTT TAATAGATGG CATTGGCCGG 001600 001601 GCATGGTGGC TCATGCCTGT AATCCCAGCA TTTTGGGAAG GTGAGGTGGG TGGATCACCT GAGGTCAGGA GTTCAAGACC 001680 001681 AGCCTGACTA ACATGGTAAA ACCCCATCTC TACTAAAAAT ACAAAAAAAT TAGCTAGGCG GGGTGGCGGG CATCTAATTC 001760 001761 CAGCTACTTC ATGAGGCTGC GACAGGAGAA TCATTTGAAC TCGGGAGGCA GAGGTTGCAG TGAGCCGAGA TCACACCATT 001840 001841 GCACTCCAGC CTGGGCGATG AGCGAAACTG TCTCAA |
Predicted Small Protein
Name | NONHSAT088374_smProtein_968:1147 |
Length | 60 |
Molecular weight | 6800.8677 |
Aromaticity | 0.0847457627119 |
Instability index | 58.4949152542 |
Isoelectric point | 9.86993408203 |
Runs | 9 |
Runs residual | 0.0080858342404 |
Runs probability | 0.0426406798956 |
Amino acid sequence | MVTVRWSAAHLIHYSFLNPGETITSEKYAQQIGKMHRKLQYLLPALVNRKGPILLHDNT |
Secondary structure | LEEEELLHHHHHHHHLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLEEEELLL |
PRMN | - |
PiMo | - |