NONHSAT088785
Revision as of 00:27, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT088785 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
788 nt |
Genomic location |
chr3+:28357392..28361264 |
Exon number |
2 |
Exons |
28357392..28357914,28361000..28361264 |
Genome context |
|
Sequence |
000001 ctttggacca cgatgaaatt gccaaatgat gcatttctca gaatgtatcc tcattgttaa gcagcccatg attgTACTGT 000080
000081 TTCTCTACTA GAAATCCTAT CTCTACATCC TGTCTCTATG AAGTCTCCTT GCCCTTCATC TCAGAAGTCC TCTCTCCCTC 000160 000161 TTCTCAAATC ACATTTATTT ATACAAAGTG AATATCACTC ATCTTATTCT GCCTTTTACT GGTGTACATG TCTTTTGTTG 000240 000241 AGCACGGTAC CATGTGCCAA GCACAATGTA CATAATAGAT gttcaaggct gcagtgagct ataatcatgc cactgcactc 000320 000321 cagcctgggt gacagGCTTT CTTTTTTTTT TTCTAAAAAG AAGAAAATTG TGTGTGTGGG TATTTATATA GATATAATTA 000400 000401 CAAGTAATTT TTTCCTTCCA AATTTATTTC AGATTTTACC AAATGTTGCA AGAACTCTGG AGTTCTTATG GTAGTAAAAT 000480 000481 GCCGGAAAGA AAATTCTGCA TTGAAAGAAT GTCTAACTGC TTACTATAAT GATCCAGCCT TTTATGAAGA ATGCAAAATG 000560 000561 GAATACCTGA AGGAAAGGGA AGAATTCAGA AAAACTGGAA TTCCTACAAA GAAAAGGCTA CAGAAGCTTC CAACAAGCAT 000640 000641 GTAGGCAGAT ACTCAAATGA CATTCAGGAA CTCTAATATT CATGGAAGTC ATTTTATAGT CCTTAAATAA TGGACTCAAG 000720 000721 CATATATGTT TGCTTTACCT TAATTATGGA AATATTAACT TTATCTGAAA TAAATATTTT ATTTCAAA |
Predicted Small Protein
Name | NONHSAT088785_smProtein_467:643 |
Length | 59 |
Molecular weight | 6968.1081 |
Aromaticity | 0.103448275862 |
Instability index | 61.1812068966 |
Isoelectric point | 9.07366943359 |
Runs | 9 |
Runs residual | 0.0014209928003 |
Runs probability | 0.042522915072 |
Amino acid sequence | MVVKCRKENSALKECLTAYYNDPAFYEECKMEYLKEREEFRKTGIPTKKRLQKLPTSM |
Secondary structure | LEEEELLLLHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHLLLLL |
PRMN | - |
PiMo | - |