NONHSAT088796

From LncRNAWiki
Revision as of 00:27, 17 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT088796

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1356 nt

Genomic location

chr3+:28798946..28800301

Exon number

1

Exons

28798946..28800301

Genome context

Sequence
000001 CTAGAACCAA GAAGCACCTA AAGTGGACTC ATGCCCAGCA TCCCTGCAGA CTGACTTTCT CTGAGCTATA GTTCTGCATT 000080
000081 GGACTGTTTT TCCTTTGCTA TCACCTGCCC AACACACAAT CCTGGATGCT TTTGATTGGT TGGATTTCTT TTTTTTTTTT 000160
000161 CCTGCCTTTT CTTTTTCTTT CCTTGACCCT GGGAATTATA AACGAGAAAT TGCTTTAAAA AGTATTGTTC TGTGCTAAAA 000240
000241 TTAGCCTTGT TTATGAACAA GTTTTATCCC TAGGGATTTC CTGAATTGCA ATCCCAGATT ACCTTGTAAA TGGGGCTGTG 000320
000321 TTGTTTGATT TGTATAGTAC TGATCTGTAG GTTAAAATAC GTTTCCTTTC TTTTGTTTCA TTCTTTTTTT AAAAGTCTGG 000400
000401 ATCCAGGTAA TGGCCTGAGT CACATTTGCT TAGCTACTGA AGCGATCTCA ATATGTTATC GCTTAGAGTT GAAACATAAT 000480
000481 CAAACATACG TTATACCTGG GGCTCTTGCA CACTATTTGA TATATATATG TTACTCTACA AAGAAACACA AACCTTGTAT 000560
000561 GTTGAAATGT AATTCCTGTT TGATCCTGCA GCTAGAATGC TAAAGAAATT GCAAATATCA AAAGTGACTT CAAATACCCT 000640
000641 GAATATAAGC TAGTCAACAG TAAGTGGATG GTTCCAGAAT ACCATATTCT AAGACAAAGC AGGAATTAGA GATCAACTGA 000720
000721 CCTCATCCAT AATGTTGCTC AGGTCTGTCT GTGGATCTGT CCATTTTGGA GTAAAAAACA AGGCATGCTT CTGTGATTGT 000800
000801 GTTTATGAAA ACTGTAGTAT TTCAGATTTA TGTTTTGCAA TTGTGCCTGC CTTGCAATAA AACACCTTCA GTTGACTCAG 000880
000881 CAATAAGGTC TCTGTCAATT TCCTGCAAAA CTGTGTCCTT ATTGGCTTTC TAAAAAAGTC CAGTGTAGAC CTATCAGTGG 000960
000961 TGACCTGCTA GACATTTCAG CTGGATCTAG CATTATTGCT CTTTCAGAAA TAGCACTAGA GCTGTCCATT GTCTACACAT 001040
001041 GGGGTCAGAG TTGTATGGTC AGATTCTCAA TTCTTCATAT TACCATCAGC TACAGAAATC TCTAGTCACA GCCTAACCCT 001120
001121 GTTACATATA TGTGCTGCCA TCTGCCATTG TGTTCTAACT CTGGAGTCCC TATTTATTTC TGAGATTTTA GGACAAGACA 001200
001201 AAAATCCTCT GGACCTCAGT GTCCTCATAT ACAAAATGGG AATAATGATA CTTCCTATGA TTGTGGTGAT AAGTGCCTGT 001280
001281 AAAAGGACAT CACATGGATG GTACTTTGCA CGTTGTAAAT TCATTGGGAT GTGGCAATGT TCAATAAATG GTGGTT
[back to top]

Predicted Small Protein

Name NONHSAT088796_smProtein_731:859
Length 43
Molecular weight 4585.4174
Aromaticity 0.0952380952381
Instability index 51.180952381
Isoelectric point 6.48785400391
Runs 9
Runs residual 0.038125376733
Runs probability 0.0417280025124
Amino acid sequence MLLRSVCGSVHFGVKNKACFCDCVYENCSISDLCFAIVPALQ
Secondary structure LEEEEELLEEEELLLLLLEEELLLLLLLLHHHHHHHHHHHLL
PRMN -
PiMo -