NONHSAT088796
Revision as of 00:27, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT088796 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1356 nt |
Genomic location |
chr3+:28798946..28800301 |
Exon number |
1 |
Exons |
28798946..28800301 |
Genome context |
|
Sequence |
000001 CTAGAACCAA GAAGCACCTA AAGTGGACTC ATGCCCAGCA TCCCTGCAGA CTGACTTTCT CTGAGCTATA GTTCTGCATT 000080
000081 GGACTGTTTT TCCTTTGCTA TCACCTGCCC AACACACAAT CCTGGATGCT TTTGATTGGT TGGATTTCTT TTTTTTTTTT 000160 000161 CCTGCCTTTT CTTTTTCTTT CCTTGACCCT GGGAATTATA AACGAGAAAT TGCTTTAAAA AGTATTGTTC TGTGCTAAAA 000240 000241 TTAGCCTTGT TTATGAACAA GTTTTATCCC TAGGGATTTC CTGAATTGCA ATCCCAGATT ACCTTGTAAA TGGGGCTGTG 000320 000321 TTGTTTGATT TGTATAGTAC TGATCTGTAG GTTAAAATAC GTTTCCTTTC TTTTGTTTCA TTCTTTTTTT AAAAGTCTGG 000400 000401 ATCCAGGTAA TGGCCTGAGT CACATTTGCT TAGCTACTGA AGCGATCTCA ATATGTTATC GCTTAGAGTT GAAACATAAT 000480 000481 CAAACATACG TTATACCTGG GGCTCTTGCA CACTATTTGA TATATATATG TTACTCTACA AAGAAACACA AACCTTGTAT 000560 000561 GTTGAAATGT AATTCCTGTT TGATCCTGCA GCTAGAATGC TAAAGAAATT GCAAATATCA AAAGTGACTT CAAATACCCT 000640 000641 GAATATAAGC TAGTCAACAG TAAGTGGATG GTTCCAGAAT ACCATATTCT AAGACAAAGC AGGAATTAGA GATCAACTGA 000720 000721 CCTCATCCAT AATGTTGCTC AGGTCTGTCT GTGGATCTGT CCATTTTGGA GTAAAAAACA AGGCATGCTT CTGTGATTGT 000800 000801 GTTTATGAAA ACTGTAGTAT TTCAGATTTA TGTTTTGCAA TTGTGCCTGC CTTGCAATAA AACACCTTCA GTTGACTCAG 000880 000881 CAATAAGGTC TCTGTCAATT TCCTGCAAAA CTGTGTCCTT ATTGGCTTTC TAAAAAAGTC CAGTGTAGAC CTATCAGTGG 000960 000961 TGACCTGCTA GACATTTCAG CTGGATCTAG CATTATTGCT CTTTCAGAAA TAGCACTAGA GCTGTCCATT GTCTACACAT 001040 001041 GGGGTCAGAG TTGTATGGTC AGATTCTCAA TTCTTCATAT TACCATCAGC TACAGAAATC TCTAGTCACA GCCTAACCCT 001120 001121 GTTACATATA TGTGCTGCCA TCTGCCATTG TGTTCTAACT CTGGAGTCCC TATTTATTTC TGAGATTTTA GGACAAGACA 001200 001201 AAAATCCTCT GGACCTCAGT GTCCTCATAT ACAAAATGGG AATAATGATA CTTCCTATGA TTGTGGTGAT AAGTGCCTGT 001280 001281 AAAAGGACAT CACATGGATG GTACTTTGCA CGTTGTAAAT TCATTGGGAT GTGGCAATGT TCAATAAATG GTGGTT |
Predicted Small Protein
Name | NONHSAT088796_smProtein_731:859 |
Length | 43 |
Molecular weight | 4585.4174 |
Aromaticity | 0.0952380952381 |
Instability index | 51.180952381 |
Isoelectric point | 6.48785400391 |
Runs | 9 |
Runs residual | 0.038125376733 |
Runs probability | 0.0417280025124 |
Amino acid sequence | MLLRSVCGSVHFGVKNKACFCDCVYENCSISDLCFAIVPALQ |
Secondary structure | LEEEEELLEEEELLLLLLEEELLLLLLLLHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |