NONHSAT088809

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT088809

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

1597 nt

Genomic location

chr3+:30030355..30031951

Exon number

1

Exons

30030355..30031951

Genome context

Sequence
000001 tcagtgatcc aaatgcacat taaaatttga gagacactgG ACTAATGcac tggttctcaa attttctgca catttgaatt 000080
000081 attttgagag ctttaaaaat attgattcct gagtcctatc cccagagatt atgatttatt tgtctggagt atagactgaa 000160
000161 catcatattt ttaaaagatc ttagatgatt ctaatacgta ccaaagacta gaaaccattg CTCTAGGCCA TGAACCTGCA 000240
000241 CAGGTTTACA GCTTCTTACA GACAAGAAAG AAGTTGTACA ACTCTTATTG CTGTAGATAT CATGAATGAT GATGTCAGCT 000320
000321 TGTCCTTAAT GGAAGCTTTG CTGCTTTCAT TCTCTCTTTC CATTGGGATA AATCTATGCC CTCTACACAT CATTTTACTG 000400
000401 GACAGGGCCA TAAACTACAT AGAAATGGAG AGGGCATAGA GCTATGCAGA TGGTGGTAAA ACACTTAGGT ACCTATATTC 000480
000481 TTCTTTCTGG TTCTAGCCAT TACTGTTTTA TTGCCCTTCT TTCCCCTCTC CTGATGCACA GGTGCATTAT GGTCACCGTG 000560
000561 CATTCCTTCT CAGCAGCTGG GAATCCCCTG CAGCTGATGT CTTTGCTACT CCATTTGTTG GCAAGCAACT ACTGTGTTGG 000640
000641 TACCACTCCA CATAAAAATT CACCAAGACT CCCAATCTCT GAGATTGAGG GAAACCTTTA CGGACTAAAT TGGATCTTCT 000720
000721 AAAATGTTTC CTGGTTTTGG TGTGTGACAA ATGTTTGTTC ATACCAAGGT TTAGGAAATC CAGATGTTTA ACAGGGCACT 000800
000801 GATGGAAATC AAGGAGTTCC AATGTTTAAA TCTTTCATGT GTTCTAGACC TATAGGTCTC AAAGAATGTG TCATCTTAAA 000880
000881 CAGTTTTAAT TGTCTTTTCA GAATTGCAAG AATATATGAT TAAATTTCAT GTTCTTTGGT ATATTTAGCT TTCAAAAAGC 000960
000961 ACCTATGCGA TAAGAAAATT AAAAATCTGG ACATTCTAGG CAGTTTAAGT GTAAACTTCT GCCACATATT TTCATTTCTC 001040
001041 TGTGTACACC AAAGACAAAT ACTTATCTAC AAAATTTGAC CATTTTGATG ATTATTATGA GACATTTGAC AGCGTGGCTT 001120
001121 ATTGGAAACA GTCTAATTAT ATTTAGGGAT TAAAAGAAAT ATTTCATTGA TAAAAATATA AATATACTCT GATATATTGC 001200
001201 CTTGAACCAG TGATTATAAG GAAAAGCATT AATTCATTCT CTATGTGAAA ACACTCATTG AACATTTATC AATATCTATA 001280
001281 AAGGTGGGAG GTTTCAAAAA ATAAATAATA CCAAATAGTA AATTAGGAAA GAAAAGATTG AATAGAGAGA CTTTTCAAAT 001360
001361 TCTAAAGAAG AAATTTAGGG AATTTCAGCG ACAGAATTAA CCAAGAACTT CTGAAATTTG ACATCACTGC AGGTATCCAG 001440
001441 GACTACAAAT AAAACCAGGA AAATTTATCA GGATAGGTGC TCTTCTTAGG CCTACTAACA ACCAAATAAA ATCACCTATG 001520
001521 CCTCTCTGGA TTCCAAAAAT ATATTCCTGA TTGTGACCAA TTCCGGAAAT CCACTCTTGC CAGCATCTGT GAGaaac
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Predicted Small Protein

Name NONHSAT088809_smProtein_443:721
Length 93
Molecular weight 10226.0631
Aromaticity 0.0869565217391
Instability index 45.9108695652
Isoelectric point 8.57684326172
Runs 13
Runs residual 0.00609946825149
Runs probability 0.0544481132717
Amino acid sequence MQMVVKHLGTYILLSGSSHYCFIALLSPLLMHRCIMVTVHSFSAAGNPLQLMSLLLHLLA
SNYCVGTTPHKNSPRLPISEIEGNLYGLNWIF
Secondary structure LLHHHHHHLEEEEELLLLHHHHHHHHHHHHHLLEEEEEEEEELLLLLHHHHHHHHHHHHH
HLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHH
HLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTT
Tiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii