NONHSAT089217

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT089217

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1780 nt

Genomic location

chr3+:42382080..42383859

Exon number

1

Exons

42382080..42383859

Genome context

Sequence
000001 AAGACAATTT CCCTAATAGA CTTTCTGACT GAGGAAGGGC AGACTGGAGG AGGAAGCACC TATATCCCCA GACTGGGCTG 000080
000081 ATGAAACAGA TGAGCCAGAA GGAAATGCTT CAACCACTTG GCACACTAAT GATGAGATGT GTATAGGACA TCTCCAATTG 000160
000161 GTCATTCCAT TCTTTTCACT GCTCCACAGG ATGCTGGAGA ACCCCATATT GATTGGAGCC ATCTTCCCAA ATCACCATCC 000240
000241 TACAATGCTC TTCTAGGGAA CTTGCTCTAT GATGTGATAG AAGACTCAAT TAAGGAATTA TTTAGAGGAT TAAATATTGA 000320
000321 TACAGCACAC TGACCACATG AACCCGGCAT CCAGAGAGGT TGAAAGTTTT AGTTATCCTG AGTTTGAGGA CCTGGATGCC 000400
000401 CTGTTCAGTA CCCTGGGTCT CAATGAAGAG TCTGTAGGTA ACAGGATAAT TAGAGTGGAC ATTGCTGACC AAGCACAGGA 000480
000481 TAAAGACAGG GATGACTGTC CTCTTGGCCA GGATAGAAAT TAGGATACTG ACAAAACAGA TATACTGGAG GTCCATCCTG 000560
000561 CCACAGACAG CTTTGATGAC TACCTGCCTA GAAGAGGTGT TGATAGCTTT GGAGACAAGT ATCAAGATCA TGCAATTCAG 000640
000641 ACCAGTATCA TGATGGGTGT CAGGACAGGT TTAGAGATGG CTCACACCAG GATATGGGTC AATGTGGGGG CCGGGATTAA 000720
000721 GATGATGACT GAGGCAGCAG AGACTATGAT AGAGGCTATG ATTCTGCAAC AGGCAGTTGC AGAAGAGCAT TTGGTAGTGG 000800
000801 GTACCTCAGA GATGATGACT ACTGAGGAGG TGGATGAAGG CCAATAAGAC AGACAGGACA ATTGGTCATG GAACTCCAGA 000880
000881 GATGATTACT CTTAGGGTGA TTATAGGCAT GATGATAGGG GTCCCTCCCA AAGATCAGAG CCTCAGAGCA TTCATAAGGA 000960
000961 AGATGATCCC TCTTCTAGCA CCCCCTCAGC TCAGTTGAGT GGCTTCTATC TTTGGAGGGG GAAAGTCCAT TGACACAGTT 001040
001041 GCTAGAAAAA GAGAAGCAGA AGAACAGCTA CAGAAGAAAC AAGAGAAACC ATATTGACAG CTGGATGAGC CAAATCTAGA 001120
001121 ACAATGGCCT CTGGAGAGAC ATCCAAGCTG GCAAAGTGAA GAAACTCAGG AACGGGAATG GTGGAGGACG GGAAGTGAGC 001200
001201 CAGTGCAGAC TGCGACCCCA GCCACATCAG GCAGAAGCAA GTCAGACCAG GACACATGAA GAAGAGAGAG TGAGAAGTCT 001280
001281 CTAGAAAATG AAACACTCAA TAAAGAGAAA CACTGCCAGT CTCCAATTTC TAAGCCTTCC AAACCTGATC AACTCCTAAA 001360
001361 GGTGATTCGA GCCCCTCCAC CAAAGGAGAC TGCTTAGGTG AAGAGAAGTT CTAATCCTCT TATTCCATCT CAGAGCTCAG 001440
001441 AAACAGAGCA GCAACCCCCT ACAGGTAGTG AGGGAAAAGT ACCTCCAGTT CAACCCTCAG AGGAAAGACC AGCAAAGAAA 001520
001521 GATGAAAATA AAGTAGACGG GATGAATGTC CAAAAGTCCA AAGTGGGAAC TCGGGCCGTG GTCCAGGAGA TGGAGGGAAC 001600
001601 AAAGACTGCT GGAGGGAGTC AGACAGGAAA GATGGCAAAA AAGATCAAGT CTGCAGATCT GCACCTGAGT CAAAGAAACC 001680
001681 TGAGGAAAAT CCAGCCTCCA AGTTCAGTTC TGCAAGCAAG TGTGCTGCTG TCTCTGTTGA TGGTGAAGAT GAAAAGGAAG 001760
001761 GAGCAGATTA CACCAAATAG
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Predicted Small Protein

Name NONHSAT089217_smProtein_833:997
Length 55
Molecular weight 5984.2437
Aromaticity 0.0185185185185
Instability index 50.6037037037
Isoelectric point 11.0000610352
Runs 7
Runs residual 0.0330623306233
Runs probability 0.0244277891337
Amino acid sequence MKANKTDRTIGHGTPEMITLRVIIGMMIGVPPKDQSLRAFIRKMIPLLAPPQLS
Secondary structure LLLLLLLLLLLLLLLLLLLLEEHHHEEELLLLLLHHHHHHHHHHHHLLLLLLLL
PRMN -
PiMo -