NONHSAT089217
Revision as of 00:29, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT089217 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1780 nt |
Genomic location |
chr3+:42382080..42383859 |
Exon number |
1 |
Exons |
42382080..42383859 |
Genome context |
|
Sequence |
000001 AAGACAATTT CCCTAATAGA CTTTCTGACT GAGGAAGGGC AGACTGGAGG AGGAAGCACC TATATCCCCA GACTGGGCTG 000080
000081 ATGAAACAGA TGAGCCAGAA GGAAATGCTT CAACCACTTG GCACACTAAT GATGAGATGT GTATAGGACA TCTCCAATTG 000160 000161 GTCATTCCAT TCTTTTCACT GCTCCACAGG ATGCTGGAGA ACCCCATATT GATTGGAGCC ATCTTCCCAA ATCACCATCC 000240 000241 TACAATGCTC TTCTAGGGAA CTTGCTCTAT GATGTGATAG AAGACTCAAT TAAGGAATTA TTTAGAGGAT TAAATATTGA 000320 000321 TACAGCACAC TGACCACATG AACCCGGCAT CCAGAGAGGT TGAAAGTTTT AGTTATCCTG AGTTTGAGGA CCTGGATGCC 000400 000401 CTGTTCAGTA CCCTGGGTCT CAATGAAGAG TCTGTAGGTA ACAGGATAAT TAGAGTGGAC ATTGCTGACC AAGCACAGGA 000480 000481 TAAAGACAGG GATGACTGTC CTCTTGGCCA GGATAGAAAT TAGGATACTG ACAAAACAGA TATACTGGAG GTCCATCCTG 000560 000561 CCACAGACAG CTTTGATGAC TACCTGCCTA GAAGAGGTGT TGATAGCTTT GGAGACAAGT ATCAAGATCA TGCAATTCAG 000640 000641 ACCAGTATCA TGATGGGTGT CAGGACAGGT TTAGAGATGG CTCACACCAG GATATGGGTC AATGTGGGGG CCGGGATTAA 000720 000721 GATGATGACT GAGGCAGCAG AGACTATGAT AGAGGCTATG ATTCTGCAAC AGGCAGTTGC AGAAGAGCAT TTGGTAGTGG 000800 000801 GTACCTCAGA GATGATGACT ACTGAGGAGG TGGATGAAGG CCAATAAGAC AGACAGGACA ATTGGTCATG GAACTCCAGA 000880 000881 GATGATTACT CTTAGGGTGA TTATAGGCAT GATGATAGGG GTCCCTCCCA AAGATCAGAG CCTCAGAGCA TTCATAAGGA 000960 000961 AGATGATCCC TCTTCTAGCA CCCCCTCAGC TCAGTTGAGT GGCTTCTATC TTTGGAGGGG GAAAGTCCAT TGACACAGTT 001040 001041 GCTAGAAAAA GAGAAGCAGA AGAACAGCTA CAGAAGAAAC AAGAGAAACC ATATTGACAG CTGGATGAGC CAAATCTAGA 001120 001121 ACAATGGCCT CTGGAGAGAC ATCCAAGCTG GCAAAGTGAA GAAACTCAGG AACGGGAATG GTGGAGGACG GGAAGTGAGC 001200 001201 CAGTGCAGAC TGCGACCCCA GCCACATCAG GCAGAAGCAA GTCAGACCAG GACACATGAA GAAGAGAGAG TGAGAAGTCT 001280 001281 CTAGAAAATG AAACACTCAA TAAAGAGAAA CACTGCCAGT CTCCAATTTC TAAGCCTTCC AAACCTGATC AACTCCTAAA 001360 001361 GGTGATTCGA GCCCCTCCAC CAAAGGAGAC TGCTTAGGTG AAGAGAAGTT CTAATCCTCT TATTCCATCT CAGAGCTCAG 001440 001441 AAACAGAGCA GCAACCCCCT ACAGGTAGTG AGGGAAAAGT ACCTCCAGTT CAACCCTCAG AGGAAAGACC AGCAAAGAAA 001520 001521 GATGAAAATA AAGTAGACGG GATGAATGTC CAAAAGTCCA AAGTGGGAAC TCGGGCCGTG GTCCAGGAGA TGGAGGGAAC 001600 001601 AAAGACTGCT GGAGGGAGTC AGACAGGAAA GATGGCAAAA AAGATCAAGT CTGCAGATCT GCACCTGAGT CAAAGAAACC 001680 001681 TGAGGAAAAT CCAGCCTCCA AGTTCAGTTC TGCAAGCAAG TGTGCTGCTG TCTCTGTTGA TGGTGAAGAT GAAAAGGAAG 001760 001761 GAGCAGATTA CACCAAATAG |
Predicted Small Protein
Name | NONHSAT089217_smProtein_833:997 |
Length | 55 |
Molecular weight | 5984.2437 |
Aromaticity | 0.0185185185185 |
Instability index | 50.6037037037 |
Isoelectric point | 11.0000610352 |
Runs | 7 |
Runs residual | 0.0330623306233 |
Runs probability | 0.0244277891337 |
Amino acid sequence | MKANKTDRTIGHGTPEMITLRVIIGMMIGVPPKDQSLRAFIRKMIPLLAPPQLS |
Secondary structure | LLLLLLLLLLLLLLLLLLLLEEHHHEEELLLLLLHHHHHHHHHHHHLLLLLLLL |
PRMN | - |
PiMo | - |