NONHSAT089464

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT089464

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2412 nt

Genomic location

chr3-:46963238..46965649

Exon number

1

Exons

46963238..46965649

Genome context

Sequence
000001 AGAGGCCCAC TATGCTGGCA GTAGCTTGGA GGAGCTGGGA GGTGCCTGTG CCCTGGTCTT GGGAGCATAC ACCTGAGGTG 000080
000081 GGATGGAGGA AAAGCCACCT GTGGCTCTGG CTAGGCCGGG ACCCAGAGGA CATCCTCAGA GCCCAGGAGC CCTGGGATTA 000160
000161 TGTGAGAAGC CAGTCCTCAC TTTGTATGTA TCCAGGCAGC TCTCTGGTCT TGTAGTTATT GTCAGCATCC ATGCTTCCTG 000240
000241 ACTGACTGTG GCTGGCTGCC TCCTGCTGTC CCATTCTTGG CCTGTGGGGA ATGCTTCATC CTGGGAAACC CAGGCCCCTC 000320
000321 CTCCAGAGCT GCCTTTGCAG GGTCTTCACC TCTGGCTGGT TGCGGGCCAC ACAGAGGTGG GAGCAAGGAA GCCTGGGGTC 000400
000401 CCGTCTCTCC CTGGGGGCCA CGGTAGGCAG TGTCCCTGCA GAGTGGCAGC GCGTTTTCCA CAGGCCTTCT CTGTTTAATT 000480
000481 GCACCCTCTA GTGGAGGAGA AGGTGAAGGA GCAGCTGGAG GCCGCCAAGC CCGAGCCCGT CATCGAGGAG GTGGTGAGTG 000560
000561 CCTGGACCAC CCTGGCATCC TCGCTGCTTC TGTGTGTCCT GTTTCTCTTC GCCACTTGct ctccctctgc cccccattcc 000640
000641 ttctcgtcac ttctttattc ccttcccacc agcccctttg ctctcgtccc tctccttcct cctcctcttt ctcccatttc 000720
000721 cctccttctc gagcctgccc tcccccttgt cctGGGGTGG CCCCTCCACC CTGATGTGTG TCTCCTCCCT TCCCAGGACC 000800
000801 TGGCCAACCT CGCTCCTCGG AAGCCTGACT GGTGAGTGTT GCCCGTGCGT GGCGGGTGCA GGCTGACTCG GGGACTCTTG 000880
000881 GTGCCAGCAT GGGCCTGGGG CTTGGCCCTT CCTGCCGTCA CAGTGCAGAG ACTGGCAGTA CAGACATAGA GTTACACGAG 000960
000961 ATAGCTACTG TTGGAAACCA GTGCTGAGGA GGACATAAGT GGTGGGATGA GAGGGGAGTG ATGGAGTGGG GCTCAGGCGC 001040
001041 GGGGAGCAGC AGGCCCCTCA TGAAGGCCCT CCTGAGAGGT TGAGAGCCCA TCTGCTCCAG AGCTCCCATT TGAGCAAGGC 001120
001121 CAACCGCTGT CTTTGGGGGC CAGGAGTGGA GGGAAGGGCA GACACAGTTT TCTGTTCCTG TTCTACCACC ATAGCTTGTT 001200
001201 CCCTCTGGCC CTGGTTTCCT CCTCTGTGAA ATGGAGGTCG TCATCCTTCT TGCTAGGCTG AGAGAGAGTG GGAGAGAGGG 001280
001281 TGCTGTGGGC CGGGAGGCTT GTGTCTGTCT TCACCTTGAG CCGGAGGTAG AGCTATATCC CTCTCGCCTG ATTCTTGGTC 001360
001361 GAGTTAACAC CAGCTGTTTT AATTTGATGA AACAAAAGCA TGGGGCATAT GTCCTGGGAA ACCCAGAGCC AGAGAGAATG 001440
001441 GGCTGAGTGC TTGTGCACTT CTGGGTGCCC ACAGTGGAGG GGCTGGGCCG GTGGCTGGAG GAGGAGCAGG GCCCACAGTG 001520
001521 GGCAGGAGCA AGTCACTCCC TGATGGTGAC CAGAGGACCA GAGCAAGAGA GGGTCTCTGA GAAACCATCC ACCTTTGCCT 001600
001601 TAGCTCAGTC CCTTGTGTTG GGTGGGTTTG TGATGCTAGT CCCCCTGCCT CAGTGGGACA GGGAATGATG GTTTATGCTG 001680
001681 GGTTTCGGAG GGTACAGAAG GGGAATGTCC TGGCCTCTTC CCCAGGGCAG CCCCCTCCAG CAACCGAGCA TGACTCCTAA 001760
001761 TGCCAGAGGG CTGCAAGAGG GGAGGGGACC CAATGCCACA TCAGGCCAGC CTTCACCTTC CTGCTTCTCC CTGCCTCCCT 001840
001841 GCTCCAGGGA CCTCAAGAGA GATGTGGCCA AGAAGCTGGA GAAACTAAAA AAGCGGACTC AGAGGGCCAT TGCCGAGCTG 001920
001921 ATCCGTAAGT GCAGTGCCTG GGAAGGTGGG GTCCTGCCCA CTGGGTGGTG GCCCAAGCAC CGGGCCCCTC CCCACCCCTT 002000
002001 CTGTCTGCCA TCCATCCCAG GTGAAAGGCT GAAAGGCCAG GAAGACAGCC TAGCCTCTGC AGTGGATGCT GCCACCGAAC 002080
002081 AAAAGACCTG TGACTCCGAC TGAGGCATGC CCTGCCCCAC CACTCGCCCA TCAGGCCTGT CCTGCAGAGG ATGGTCTTGG 002160
002161 GCAGGGATGG GGGCTAGGCT TGCCATCACC TCCAGTTTGG CTTCTGAGCA GAGACTCCCT GCCCATCAAG TCTGAAACCC 002240
002241 CCATGGATGA GGTCAGCTCC TTGTCTGCTG GGTGGCCCCT GCCATTCTGA ATGGAGGCAG AACCAGCAAC AACTCTGGGC 002320
002321 GTGCCtgtgt ctgcacatgt ggatgtacat atgtctgtat atatgtatat atTTTGAACT TTCTAAAAAA AAATCTGGAA 002400
002401 ATAGAAACAA GT
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Predicted Small Protein

Name NONHSAT089464_smProtein_11:214
Length 68
Molecular weight 8008.0513
Aromaticity 0.149253731343
Instability index 84.7925373134
Isoelectric point 5.49725341797
Runs 11
Runs residual 0.0208642650621
Runs probability 0.0452939570587
Amino acid sequence MLAVAWRSWEVPVPWSWEHTPEVGWRKSHLWLWLGRDPEDILRAQEPWDYVRSQSSLCMY
PGSSLVL
Secondary structure LEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLHHHHHLLLEEEEL
LLLEEEL
PRMN -
PiMo -