NONHSAT090034
Revision as of 00:33, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090034 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2594 nt |
Genomic location |
chr3-:55543262..55644938 |
Exon number |
3 |
Exons |
55543262..55545304,55640779..55640994,55644604..55644938 |
Genome context |
|
Sequence |
000001 GAGAAGCTGA GCACCCATGC TGGAACTCAC CATATAGATG CCTCACTGCT TTTCATTTCT AAGTTTCTCC TCCATGTCTT 000080
000081 TTTCCTCTTG CCAGTGTTTA GATAAAATTA TTTCTATTTG ATACATTTTT CTTCACTCTT GTCCTTAATG GGTCAAGTCT 000160 000161 CATGTGGCTT CATAGCCCTG ACAGACAGTA GTATTGCTAt tttggagtca aggtctcgtt ctgtcggcca agctggagtg 000240 000241 cagtggcacc atcagggctc actgcagcct tgacctccga ggctcaagga atcctcccac ctcagcctca gccttccgga 000320 000321 tagttggtac tacagATGAT CCAGCTCTGT CGGAGGCACG TAGGCACAGC CAAATCTCAT GCTGTACATT GATCACCTGT 000400 000401 CCAACCTTTG CCTAGAGTGG GAGCCCCCAG TTCCTTCGAG ATCCAACATT ACCTGTCTGT AAAGAAGAAG AGGAGGAGGG 000480 000481 AGACAGCGGG GAGGATCCGG TGGCAGTTTA ACACCAGAGC AGGTCCAATG TTTACTTTTA CCCTTTTGGA GCTATTAGAA 000560 000561 GGGCTGAATA AAGGGAACAT GCAGCTCTGC AGCAATATTC TGATAATGTA TTGCAGTGCG GCTCACATCA CTGTCCACCA 000640 000641 CCACCTGGAG CGGCTCATCA GAACTGAAGG GGAGTTTTCA CTTACCTTAT TGAGCGTGAT TCTGTTCTAC TTGATATTTC 000720 000721 CTTCACCACC TCATGTCATT TCTCATGGAT TTGGTTATGA TGGAAAGGAA GAATGCAGAG GAGGAGAAAA GTGACAGATC 000800 000801 CTCCATTTTT GTTGGGATGC GGGCATTTTG AATGTGATCA TCTTTGCTGA ATGTCATTAT TTGATAACAT TTTGTTTATG 000880 000881 TTACTTAAAC ATCATTGGAT AAATTTGAAC TCCATGGGAT TTTATCTGTG GATTCAGCTT CTGTTGGACA ACTAGCCTCA 000960 000961 TCTCCAGTAT CCTGCTGGTT CACTCTAATT GGTCATTCCT AATGCATTAG ATTATCAAAA AGTATAAATT CGCTGTGAGT 001040 001041 GAGTGGTGTT GGCAGTGTTT GTATACCATG ATGCATGGAG TGTTTGACGA AGAAACAAAA AACACCAAAA ATTGCGAGCC 001120 001121 TTTACCCTCC TCTATTTCTT TAATCTGTTG TTTGAAGAAC CGCATTTTGA GGGTGTAACC AGTAGTCACC TCTGGGCCAG 001200 001201 GTTGGAAAAG AAATCAATTT TTTAAACCAC TAATGCTTGC CAAGAAATCG CCTTATGAGA ACATGGTGTG TGTCTCTGAC 001280 001281 AATGCGTGGC ACATCTAAAT TGATCATTCA TAATTTTATC TACCCAGTCA TGTACTGGAG AGTGGCAAAA GTCTGAGGCA 001360 001361 CCTGCATATC TCTAGTCCCT GTGTTCTGCA CATCCCCACG GTGGGGACGC CACCAAGCCT CAGACTCTTA CCATCCCGGT 001440 001441 GCATGCAGGT CTCCATGAAG AAGCTGGGAC TCATTCACAT TTCAAGATCC AAATGCTGTG CAAACAGTGT AAGCTTAGAT 001520 001521 TTTCTGTAAA TGAAGGGTCA TTTCTCTTTT TTTTTTTTTT TAAAGAAAAT GTGTCTGCAA CATGGATTCC AAAGCATTTT 001600 001601 CAGCATCAAA CATGAAAACA TTGATGAATG AGGAACAATC ACAAAAGCTG TGTCTCTGTA TATAGCTCTA CACAACATGT 001680 001681 ATGTGGATAC AGTCATTATT TAAAGCACAT GCCAGGGAAA AAGACCAAAT TTTGAGGTCT TTTACATACA GTGATATGGT 001760 001761 ACTAAGGAGA ATTAAACTCC TACTGCTTCC TCTGAATATT AAGAAACAAT TTAAATTGTT ATAACTTCAT AAAACTCATG 001840 001841 ACTGAGTCTG GCAAACATGT GCAACTCTTG TATTGCTCCA TTTTCTTGTC AATGGAAGAA ACCCTTCCAC GTGTATGCAA 001920 001921 GTGGGAGATG AAAACCTGCA TTTTTAAAGG ACAAACAGTG AATTTAAGCA TGAGTGGCCT TAATAAATAT AGTTGTCTTT 002000 002001 CTTTGCTGCT GTGGAAAGGA TTCTAAACAG ATGTCCCTGA AGTCTTGCAT TGAATTTAGT CATTATTATT ACTTTTTAAA 002080 002081 ATGTTGGTGC AATTAACTCT GGACCTCTCT TGTGAGCCAT AGAGATATTT AAAAGACAAA CACCTTATTT GTCGGGGAAG 002160 002161 ATGAAACCGT CCCTGAGTTG CACCATTCTT TCTTGGTGCA TTCGCGGTTA AGATACTCAA GCAGGTTTCT TGCTTCTGGC 002240 002241 TTTGTTCTTG TCATCAGTAA GTATAACAAA CTATGTAATG CTTATGTGTT GCATAAACAA TCCAAATGCA TTCATGTTTT 002320 002321 AAAAGTTTGT CCTTTAACTA TCAGAGGGAT CTAGGTCTTG GTTAGAGAAG TAAGCAGAGT TCTTTGCAAG CTTATTTAGC 002400 002401 ACATTTTGAC ACAATGTTGC ACTGAAAACC CAGGCCACAA ATGTGTCCCA GTGAACAGTT TGGATGTCCT CAAAGAAGTG 002480 002481 GTTCTCACTG CCTCCTACAA CCAGGTCTTG ACCTGAACTC TGCAACTGAA TACTTGAAGT AGGAAGTAGG AAATCCAGTA 002560 002561 GGGAAAATAG GGTCCTTGAA ACAGAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT090034_smProtein_527:793 |
Length | 89 |
Molecular weight | 9979.5383 |
Aromaticity | 0.102272727273 |
Instability index | 51.7398863636 |
Isoelectric point | 6.01690673828 |
Runs | 12 |
Runs residual | 0.005 |
Runs probability | 0.0373829712066 |
Amino acid sequence | MFTFTLLELLEGLNKGNMQLCSNILIMYCSAAHITVHHHLERLIRTEGEFSLTLLSVILF YLIFPSPPHVISHGFGYDGKEECRGGEK |
Secondary structure | LLLHHHHHHHHHHLLLLHHHHHHHHHHHHHHHLLHHHHHHHHHHHLLLLLHHHHHHHHHH HHEELLLLEEEELLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHH HHHHHHHHLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiTTTTTTTTTT TTTTTTTToooooooooooooooooooo |