NONHSAT090239

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT090239

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2683 nt

Genomic location

chr3+:64438806..64457187

Exon number

6

Exons

64438806..64440482,64442500..64442677,64444965..64445080,64447943..64448409,64456256..64456373,64457061..64457187

Genome context

Sequence
000001 Tctttgcttc tcaaaggtga tgtcagagac cagcagccat gaaattatct gcaagctcat tcaaattgca taatcctagt 000080
000081 aactcagaat ctgcatttaa acaaaacccc taagcaatat gaatgcacac tggagtttaa gaagcactgT TCCAATTAAC 000160
000161 CCATAACACA TCCCCCTTAA AGGACCATCC TACAGCCCCT CTGTGATTTG CCAGAGTGGA ACTATGTGGT TCAAACCCTC 000240
000241 AGTCTCCCCA GGTACTGGCT ctgtatgaag ccctatttta aatgcttcta cagacaacca ttcattttaa ccttgctaca 000320
000321 gctctgtggg actggcttac tattattctt aactggaata aaacaaggtt cagagaagtg aagtgacttg tccaagctag 000400
000401 tgacggattc aggattttaa tacaggttcc atttgattcc aaagttggtt ctctttacaA TAAAACAGAT GTCACCGTGC 000480
000481 TTCATCCAGA AACAGGTGAG CACAGAGTAG GTGAGACAGC TGGTGCAATC CTAGCTCTTC TTGCTTTGGA CTGAAACTTG 000560
000561 CAAGACCCTT TCTCTGCTGC TGCCTGAAAC TTGCAAGACC CTTACTCTGC TGCTAGCAAT GAAAGAGAGA CCAGTTGTCC 000640
000641 TGCTCCAGCA GCAAGTCAAT ATCTCACCTT GAAAATGACT AAAAAAAAAA AAAAAGTGGT GTTCTCATCA CCACTGAGAA 000720
000721 CTCCCCCAAG AGAACACAGT CTGTTTGGCC TCTTGGTAGG ACCCTTCTGG ATATGTAGTT CATTTCCTCT TCAGCAGAAA 000800
000801 ATTTGGTCTC TTGAGTATTA AAACGTATGC TTTTCTTTTG TGTTCTCTTT TTGCAAGCCA AAAATCATCC AACCAGACAA 000880
000881 CCCTTTCTCT GTCATGTATG GGACATGTAC AATTTTTAAA TAGTTGTTAA AAAAAAAATT GGAACTTCAG TTTAAATGGA 000960
000961 CTAAAACTTC CTACGTAGCG TGCAACTGGG GTCAGTATGG CCAAGATGTT AAGTGCCCGT GAAGTCACCT CTTTTGTCTT 001040
001041 TTAAAAGGAT AATCAATGCC ATAGACTAGG TTGAAAACTA GATCCAAGCA GAGGCCCCTC ACATTCCTTG GGCATGTAAA 001120
001121 ATGGACAAGT AGTAGACTGA ATTGTCATTT CTTCATAAAA GTGGTTGCCA GGATTTGGGT CTGTATGAGT CAGAGCAGCC 001200
001201 TAGCTACTCC AACGAACAGC AAGTCTCACA GGCCTATCAA AAGAGCTGTT TCCTGCTTTT GCTCACATCA TAATCTGATG 001280
001281 CAAGTGAGGC AGGGGAGGGG GCGAGAGGAG GGGAAGAGTG AGTGGGAAGG TAGTGCTCTG CTCCGCCCAG ACATTCAGGC 001360
001361 TGATAATTCT TCTGAGGGCT GCATCTGCCA TCTTCCAGAA ctgcaatgtc caatatggca gtgatgtcat atgtgaccat 001440
001441 ttatatttaa atgaatcaaa agtaaaaatt cactttctct gttgcattag ccatatttcc agttctcaaa agccacatgt 001520
001521 gactagattc tactatacta gatgcacaga atagaagatt tccataattc cagaaaattc tatttgacCA CTTCCTCTAA 001600
001601 ATTTCAGAGT GCTCCACCGG ATTGTCTGAA TCCGACCTGC AGACAAGAAA AGAGAAGGTA AAGAGTCAGT GAGGACtAAC 001680
001681 CCACAGCCCC AGGCCCCTTC TATTTCTGTC ATGTTGTGGA GCACTGACCT TTTACAAAAG CTCTCCAGGG GATTCAGAGC 001760
001761 TTTGGGAACC AATGATGCCA AGAGCTGGGC AACGTGATCT CTACTGCTGC TTCCAAGCCT GACAGCATTA TCCTCCACGA 001840
001841 ACCTCTCCTT TGTAAccttt tggaggattc tgaggatgcc agacgtgaaa agtgcctggc acagtgcttg gtatgtagga 001920
001921 ggcATGGGAT GAACTGTGTT AGCCAGTGGC CTGCACAAGC TTATCTTCAC Ccctgcaggg atgggctgat cactgcctct 002000
002001 ccaggcagcc attttcatgg atggtcagct aggctatgaa acagttcatt ctctggaggt gccaaagcca gtttcccagt 002080
002081 gattcgcatc agcccggttt cacttttgtc ttctgCTGTT AGACATTTCC TCTTGTCAGA GCAGAAACCT CAGACTTCAT 002160
002161 ATTCTGTGGA TAAATCACCC TCGAATTGCT CCCCCCTTCC TCAATCACCG CCAAAAAATG CAAAAATAAC CAGATTCTTA 002240
002241 GCCTAAACAC AAGCACTTTC CATGTACTAT CTAATCCAAA CATCCCAAaa acacaagttt aaaaacatgc tggagatcac 002320
002321 acagctaaaa agtcacaaat caagcctaga ccccaagggg tctaactcca agttcatgga cttaaccacC TCACAATATT 002400
002401 CTTGCCTGTC TGAGCCCTTT AGCTATTCAG CAGTGAAACC TGTTACCGTG AGATGGCACT CCTGATCACA GATCCTTAGC 002480
002481 TGGTGGCAGT GCTGGTGTTT ACAGCCAGGT TTTCCAGAGT CATTGTGGTT TGTGAAAAGG AATAATCACA GCAGATCTGG 002560
002561 GCTAAATGCA GGTTGCCGCT AGAAGACATG GCAAATGATG GCTGGCATTG CAAATACAGG CAAAAAACAT ACACATACAT 002640
002641 GAAAAAATAG CAGAGGAAGA GGCAAACTGC AGAGGGCATA GAA
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Predicted Small Protein

Name NONHSAT090239_smProtein_1184:1423
Length 80
Molecular weight 8846.8857
Aromaticity 0.0379746835443
Instability index 61.7240506329
Isoelectric point 7.69158935547
Runs 8
Runs residual 0.0390150858332
Runs probability 0.031962109168
Amino acid sequence MSQSSLATPTNSKSHRPIKRAVSCFCSHHNLMQVRQGRGREEGKSEWEGSALLRPDIQAD
NSSEGCICHLPELQCPIWQ
Secondary structure LLLLLLLLLLLLLLLLHHHHHHHHLLLLLLHHHEELLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLEEELLLLLLLLLLL
PRMN -
PiMo -