NONHSAT092038

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT092038

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2117 nt

Genomic location

chr3-:129101843..129118276

Exon number

5

Exons

129101843..129103061,129112478..129112640,129115060..129115265,129115883..129115985,129117851..129118276

Genome context

Sequence
000001 CCCGGCGCTC TCTCATCCCT TCTCTCTTCC TTGGTGCTTC TTTTTCCTGC TCGGTGAGTT TGTTTGTTTG TTTGTTTTTG 000080
000081 AGACAGAGTC TCACTTTGCT TCCCAGGCTG GAGTGCAGTG GTGCGATCTC AGCTTACTGC AGCCTCCGCT TCCGGGGTTC 000160
000161 AAGCGATTCT CCTGCCTCAG CCTGCCAAGT AGCTGGGACT ACCGGCGCCC ACCACCACGC CTGGCTAATT TTTGAATTTT 000240
000241 TAGTAGAGAG TGGGTTTCAC TATGTTGGCC AGGCTGGTCT GGAACGCCTG ACCTCAAGTG ATCCGTCCGC CTCGGCCTTC 000320
000321 CAAAGTTCTG GGATTACAGG CGTGAGCCAC CGCGCCCGGC CTGAGTGAGT CTTAATCCGT GGCCATCTGC GTTCCTGCAG 000400
000401 GCTTCATCTG GCCCTATGGT CCCCTGAGGC ATCATGGCTG CCCTCAGATC CCTTGTGAAG CCCAAGATCG TCAAAAAGAG 000480
000481 AACCAAGAAA TTCATCCGGC ACCAGTCAGA CCGATATGTC AAAATCAAGA GCGTAACTGG TGGAAACCCA GAGGCATTGA 000560
000561 CAACAGGGTT CATAGAAGGT TCAAGGGCCA GGTCTTGATA TGATGCCCAG CATTGGTTAT AGGAGCAAAA AAAAAAAAAA 000640
000641 AAAAAAAAAA CCAGAAAGCA CGTGCTGCCC AGTGGCTTCC GGAAGTTCCT GGTCCACAAT GTCAAGGAGC TGAGAGTGCT 000720
000721 GCTGATATGC AACAAAGATG AGAAGAATAA TGTCTGGGGT GAAGGTGAAG CACCCAGCCC AAGACTCAGC AGCCAGGAAG 000800
000801 TGGCCCAGCG CTCTTTATAC CACGGGTGCA GGAATTCACA CAGAAAAGTG GAGGCCAAGG CGTGAGAATT CCTCAATGAC 000880
000881 TGCCCTCTAA AGGAAGAGGA CCAGGCTTCC TGTCAGAGAC TGAGGACCCA GGAAGAAACA TGTCTCGGCC CCTGTCCCCC 000960
000961 TCCACAATTC AGAGGCCACA TTCTAACAGG GGAGGCTGAC CAATTAAACA GATAATGACA CCTCCTAGAG CTAAGAGCTC 001040
001041 TCCGACTATG AACCAGATGC CTGGAGAACA CGGATGAATG GTCTGAGCAT GAGCAGGGGT GGGAGGCAGC GTTAAGGGAG 001120
001121 GCATCAGAGT CAGAACCTAG CAAACAAGTG TTTGTGAAGA AGAATTCATA GAAAAGGGCA ATGCGGGCAT CACATGGGCT 001200
001201 AAGGAACAGA GGGGTAGCAG TAGCTGTTGT GCCAAGCTGC AGGTGTTATA CACTACCCTC TAGATCTGGG TTTCCTTAAA 001280
001281 ACACCTTGAG AGGACAACCC TGCAAAGCAC GGCACAGTGG CCGAGAGGGA AAGGAGCATT CGAGGTCTCA GTCCTCGCTC 001360
001361 TGAGCCTACT TCTCTGCTTC TGGGCTCCAG CCATCTTTGT GGAAAGGGGG CTGCTAGTGA CACCCTCTCA AGGGTCTTTC 001440
001441 CAGCTCTAGG TCGGCTGTGC TGGAGTCTAG GATTTGCCCA CTGAGAAATC TGTTTCCAAG TTCCTTCAAC CTGATGCATC 001520
001521 CTGCAGCATC ACGGCAGCTG TTCAGAGTGG TCAGAAGGCC CCTGAATGAG CTCAGTAGAG GGAAGCCTGG GAACAGGGAG 001600
001601 GCACCTGCAG CTCTACTCAT GGCCTGGCCA GAGCTCAGCA GCTCTTCTCT GCCATCTAGT GGGGATGGCA TACCATCACT 001680
001681 GGGGACCACC CTGTGCAAAC TGGTGAGCCT GAGTGCCTGT CACAGAGGGA AAGAAAGGGG GGGGATACAG GATTTAGATG 001760
001761 AAATAGCAAC TCCTACCCTA TTGTCAAAAT CATCCAGCTT TTTCAAAACA TCATATTGTA CTGATTTTTT TGTGTTTTTG 001840
001841 ACAGAGTCTT GCTGTGTCAC CAAGGCTGGA ATGCAGTGGC ATGATCTCGG CTCACTGTAG CCTCTGTCTC CCTGGTTCAA 001920
001921 GCAATTCTGC CCCAGCCTCC CAAGTAGCTG GGACTACAGG CATGCGCCAC CACACCCAGC TAAGTTTTGT ATTTTTTTAG 002000
002001 TAGAGTCAGG GTTTTACTTT GGCCAGGCTG GTCTTAAACT CCTGGCCTCA ACTGATCTGC CTGTCTCGGC CTCCCAAAGA 002080
002081 ACTGGGATTA CAGGCATGAG GCACCGTGCC TGTCCCA
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Predicted Small Protein

Name NONHSAT092038_smProtein_737:889
Length 51
Molecular weight 5666.4869
Aromaticity 0.06
Instability index 55.614
Isoelectric point 11.3950805664
Runs 9
Runs residual 0.0153216374269
Runs probability 0.0142201024554
Amino acid sequence MRRIMSGVKVKHPAQDSAARKWPSALYTTGAGIHTEKWRPRRENSSMTAL
Secondary structure LLEEELLLEELLLLHHHHHHLLLLLLEELLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -