NONHSAT092038
Revision as of 00:41, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092038 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2117 nt |
Genomic location |
chr3-:129101843..129118276 |
Exon number |
5 |
Exons |
129101843..129103061,129112478..129112640,129115060..129115265,129115883..129115985,129117851..129118276 |
Genome context |
|
Sequence |
000001 CCCGGCGCTC TCTCATCCCT TCTCTCTTCC TTGGTGCTTC TTTTTCCTGC TCGGTGAGTT TGTTTGTTTG TTTGTTTTTG 000080
000081 AGACAGAGTC TCACTTTGCT TCCCAGGCTG GAGTGCAGTG GTGCGATCTC AGCTTACTGC AGCCTCCGCT TCCGGGGTTC 000160 000161 AAGCGATTCT CCTGCCTCAG CCTGCCAAGT AGCTGGGACT ACCGGCGCCC ACCACCACGC CTGGCTAATT TTTGAATTTT 000240 000241 TAGTAGAGAG TGGGTTTCAC TATGTTGGCC AGGCTGGTCT GGAACGCCTG ACCTCAAGTG ATCCGTCCGC CTCGGCCTTC 000320 000321 CAAAGTTCTG GGATTACAGG CGTGAGCCAC CGCGCCCGGC CTGAGTGAGT CTTAATCCGT GGCCATCTGC GTTCCTGCAG 000400 000401 GCTTCATCTG GCCCTATGGT CCCCTGAGGC ATCATGGCTG CCCTCAGATC CCTTGTGAAG CCCAAGATCG TCAAAAAGAG 000480 000481 AACCAAGAAA TTCATCCGGC ACCAGTCAGA CCGATATGTC AAAATCAAGA GCGTAACTGG TGGAAACCCA GAGGCATTGA 000560 000561 CAACAGGGTT CATAGAAGGT TCAAGGGCCA GGTCTTGATA TGATGCCCAG CATTGGTTAT AGGAGCAAAA AAAAAAAAAA 000640 000641 AAAAAAAAAA CCAGAAAGCA CGTGCTGCCC AGTGGCTTCC GGAAGTTCCT GGTCCACAAT GTCAAGGAGC TGAGAGTGCT 000720 000721 GCTGATATGC AACAAAGATG AGAAGAATAA TGTCTGGGGT GAAGGTGAAG CACCCAGCCC AAGACTCAGC AGCCAGGAAG 000800 000801 TGGCCCAGCG CTCTTTATAC CACGGGTGCA GGAATTCACA CAGAAAAGTG GAGGCCAAGG CGTGAGAATT CCTCAATGAC 000880 000881 TGCCCTCTAA AGGAAGAGGA CCAGGCTTCC TGTCAGAGAC TGAGGACCCA GGAAGAAACA TGTCTCGGCC CCTGTCCCCC 000960 000961 TCCACAATTC AGAGGCCACA TTCTAACAGG GGAGGCTGAC CAATTAAACA GATAATGACA CCTCCTAGAG CTAAGAGCTC 001040 001041 TCCGACTATG AACCAGATGC CTGGAGAACA CGGATGAATG GTCTGAGCAT GAGCAGGGGT GGGAGGCAGC GTTAAGGGAG 001120 001121 GCATCAGAGT CAGAACCTAG CAAACAAGTG TTTGTGAAGA AGAATTCATA GAAAAGGGCA ATGCGGGCAT CACATGGGCT 001200 001201 AAGGAACAGA GGGGTAGCAG TAGCTGTTGT GCCAAGCTGC AGGTGTTATA CACTACCCTC TAGATCTGGG TTTCCTTAAA 001280 001281 ACACCTTGAG AGGACAACCC TGCAAAGCAC GGCACAGTGG CCGAGAGGGA AAGGAGCATT CGAGGTCTCA GTCCTCGCTC 001360 001361 TGAGCCTACT TCTCTGCTTC TGGGCTCCAG CCATCTTTGT GGAAAGGGGG CTGCTAGTGA CACCCTCTCA AGGGTCTTTC 001440 001441 CAGCTCTAGG TCGGCTGTGC TGGAGTCTAG GATTTGCCCA CTGAGAAATC TGTTTCCAAG TTCCTTCAAC CTGATGCATC 001520 001521 CTGCAGCATC ACGGCAGCTG TTCAGAGTGG TCAGAAGGCC CCTGAATGAG CTCAGTAGAG GGAAGCCTGG GAACAGGGAG 001600 001601 GCACCTGCAG CTCTACTCAT GGCCTGGCCA GAGCTCAGCA GCTCTTCTCT GCCATCTAGT GGGGATGGCA TACCATCACT 001680 001681 GGGGACCACC CTGTGCAAAC TGGTGAGCCT GAGTGCCTGT CACAGAGGGA AAGAAAGGGG GGGGATACAG GATTTAGATG 001760 001761 AAATAGCAAC TCCTACCCTA TTGTCAAAAT CATCCAGCTT TTTCAAAACA TCATATTGTA CTGATTTTTT TGTGTTTTTG 001840 001841 ACAGAGTCTT GCTGTGTCAC CAAGGCTGGA ATGCAGTGGC ATGATCTCGG CTCACTGTAG CCTCTGTCTC CCTGGTTCAA 001920 001921 GCAATTCTGC CCCAGCCTCC CAAGTAGCTG GGACTACAGG CATGCGCCAC CACACCCAGC TAAGTTTTGT ATTTTTTTAG 002000 002001 TAGAGTCAGG GTTTTACTTT GGCCAGGCTG GTCTTAAACT CCTGGCCTCA ACTGATCTGC CTGTCTCGGC CTCCCAAAGA 002080 002081 ACTGGGATTA CAGGCATGAG GCACCGTGCC TGTCCCA |
Predicted Small Protein
Name | NONHSAT092038_smProtein_737:889 |
Length | 51 |
Molecular weight | 5666.4869 |
Aromaticity | 0.06 |
Instability index | 55.614 |
Isoelectric point | 11.3950805664 |
Runs | 9 |
Runs residual | 0.0153216374269 |
Runs probability | 0.0142201024554 |
Amino acid sequence | MRRIMSGVKVKHPAQDSAARKWPSALYTTGAGIHTEKWRPRRENSSMTAL |
Secondary structure | LLEEELLLEELLLLHHHHHHLLLLLLEELLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |