NONHSAT092829
Revision as of 00:44, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092829 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1470 nt |
Genomic location |
chr3+:155007815..155011965 |
Exon number |
5 |
Exons |
155007815..155008635,155008729..155008832,155008976..155009080,155011409..155011591,155011709..155011965 |
Genome context |
|
Sequence |
000001 tgtatatgag ccattttgta tttttgctca tgtacctgtg gaaattgcca tattcctaga agagggatag ctaagtcaaa 000080
000081 aattaaatat atatgtaatt ttgatagata tgtactgcca aacatcccgc aaaatgtacc attttgaatt cccaaagaca 000160 000161 atgtatgaga atgcctaatt gcacacagtc ttaccaactc atatgttgtc aaacatcttt atttttttcc catctgataa 000240 000241 gtgagcaaca attcctcagt gtagttttaa ttacatttct ctttttgtga acaagagatt aagtaagtgt acttttacat 000320 000321 tatatgttct ctgaattgtc tgtttttatc tctagcccat tttctttctt tttttttttt tttttttttt tttttgtaga 000400 000401 gatggggtct ctctctgtcg cctaggaagg tctccaattt ctgggctcaa aggatcctca caaagtgctg ggattacagg 000480 000481 catgagccac cttgcacagc cTCAGCCCAC TTTCTCTATA GTTTTTTCCA GAGGGAAGGG GGGATAATTT TTTGTAATGT 000560 000561 GATTAAATTT ATCAAACTTT TTTTAATGAC ATGCATTTTT CATCACAGCT AAACATTTTT CTCACTCAGA ATATAGAGAA 000640 000641 ATTCACTCAT AATTTCTTAT TGTCCTGAAG AAATTCTTAT GCATACCAAA GTGCCAGTTT ATGATCCAAG TTTGTAAAGT 000720 000721 GATGTCAAAC ATTGCATTGT TTAACATGAG ACATTTAATA ATCAGTCATG TTCATAGTTT TCTTAATTCT TCTAAATGAT 000800 000801 GTCAATCTGA TATCTTCTTG CCTTTCTAAG AGAAGACAAC ATAAATCATT ATGATGCAGC CCACAATCCA GCCAATCAGG 000880 000881 AGAAGAATAG GAACCAGAAG GTGTGAAAAT GTAGACCCCG CTTTAagaga atacgtgaga ctgtcataaa ccctgggtat 000960 000961 tttgaatcaa accatgggtc ttttactgtt atgtgacctt tggcaattct gggcttgaac tttcctactg CTTTTTCAGC 001040 001041 CATTATTCCT GTTGGTGGGT GGCTAGGTCA GGCCACGCTT ACCTCTTTCT TTTGTTATCC AGCGTCTCTT TGAACTTTAA 001120 001121 ATAGAGAGAA ATCTGAAGAT TGCGGCAGCT GCCCGTCTCC TGGCTGCCAA TTGTCTGCAG AGTGATGTAA GTCATGGGAA 001200 001201 AGCAGAACTC CTCGGTAACA TGAAGAAAAT GTTCTATAAA GAAGGTGTAC AGAGGAAAAA CAACATTCCA CCTATACAAG 001280 001281 TGCTATCAag gagaagggtg atatattaga aagaaaggat tttgatgttg gagagacttg ggttcaaatt ccagctcttt 001360 001361 ctgtaatgaa agccaagttg cttaacctgg gaatcagctt ctttagtttt aaaatgagga taataatacc tactcatggg 001440 001441 agtcgcataa agatgaaatg aaagtctgta |
Predicted Small Protein
Name | NONHSAT092829_smProtein_164:289 |
Length | 42 |
Molecular weight | 4831.7172 |
Aromaticity | 0.146341463415 |
Instability index | 48.1853658537 |
Isoelectric point | 6.49066162109 |
Runs | 8 |
Runs residual | 0.0191530749663 |
Runs probability | 0.0470875287052 |
Amino acid sequence | MRMPNCTQSYQLICCQTSLFFSHLISEQQFLSVVLITFLFL |
Secondary structure | LLLLLLLLLLEEHHHHHLHHHHHHHLHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTo |