NONHSAT092927
Revision as of 00:45, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092927 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1552 nt |
Genomic location |
chr3-:158262555..158288858 |
Exon number |
6 |
Exons |
158262555..158263366,158271651..158271830,158279186..158279294,158285749..158285845,158287960..158288012,158288558..158288858 |
Genome context |
|
Sequence |
000001 CGCAATCAAC ACAGTGGAGG CGAGAAGTCT GGCCTTGCGC CGGCCGGGGA GCTTTTCGCC AAGGCTCCTG TGGGATGGGA 000080
000081 TAGCTTGTTC TCTGGGCTGC AGGAACCAAA ACATTAGACC ACCCTTTCtg tgaccttggg catgccgccc tcggttccga 000160 000161 gccgcaagtc tttctttcgg ggaaaatgaa aaggggtcaa gatttggacc agatgacacc caatgtccca ttcaacggtc 000240 000241 gcattctgtc atccACAGGA ATTAGTCCTG TATCCGAAAC ATTCTCTGGT AGTCAAAAGC TGAGCCTGGA GACAGATGGA 000320 000321 GGGGAAGACA GAAGAGAGAT TAAGGAGAAG AATGGTTTCA TTTGGAAGGA CACTGACTAA GGAAAAACAG AGAAAAGGAT 000400 000401 GAAACCCAAG CCAACTCTGC AACTCTATTA AAAACACCAA GACTTCAATA Tgaacctggc atggtgggca cagtcgggca 000480 000481 ctgcaggcgg cttgcctcca gcagaaggaa tactgctact cagctctaga tgattgccct gaagaaattc atgcccactg 000560 000561 aatctcctta aagggaggca gtgcattctt catggctaga gcttcagcag ctatctagaa ccatatggtg gaagccactt 000640 000641 actgagaact gtgaaacaag agcctgggtc cctgacatat gaagccacca tacctacctt aaagtgtctt tcacttgagg 000720 000721 gaaaaataca tctttcttag AGATTTGAAT TTTAATGTCC CAGAAATATA AAGAAGATGG CATTAAAATG TCCTATATGT 000800 000801 TGGCAGTCCT ACCCTGAAGA CTTTTTTTGC TTATCTTTTG TTCTGAGCTA CAGTCTTCGC AGAGACTAAA TTAGTGACTG 000880 000881 GACAACAGAA GAAAATagac catcctggct aaaatggtga aaccccatct ctactaaaaa cacaaaaaat tagctgggca 000960 000961 tgttagcggg tgcctgtagt cccagctact cgggaggctg aggcaagaaa atggcgtgaa cctgggaggc ggagcttgca 001040 001041 gtgagctgag atcgcgccac tgcactccag catgggggat agagcgagac tccgtctcaa aaaaaaaaaa aaaaaaaaaa 001120 001121 aaaagaaaaT AGAAACGGGA AATATTCATG TCAGCTGTTA AAAACCAGTT TTGTAAAGCA AGGCCTAAAA GTCCTATCTC 001200 001201 TGGCATGTTT AGTATGGAAC GTATAGTTGA TTGTCATTCA GCTACTAGAG AAAGGTATTC TACAATGGCA GATAGCCTTA 001280 001281 TCAAAACAAT TAGCCGGCTT TCTCCACAGG GAATAGCAGT GGGGTAAGTA AGACTGAAGT GAGAGCTCTT ATCAGTTTTC 001360 001361 TCAGAAATGA TTTCTCCATC ATAGGTATTT GGCCAACTGG TTAGGTCTAG CATGAACATG TGATTTCTAA AACAATGAGC 001440 001441 TGAGATCTGC TAACATGTTG TAAAGGAGCA TCTAGTAGAA GCTGATCTCT AAGCAAAATC ACCAATTTAT TTAAGTTTCA 001520 001521 AAAATTTTTT TTCCATAAAT ATGTTCTTTA AC |
Predicted Small Protein
Name | NONHSAT092927_smProtein_185:379 |
Length | 65 |
Molecular weight | 7145.8208 |
Aromaticity | 0.0625 |
Instability index | 48.21875 |
Isoelectric point | 4.98834228516 |
Runs | 11 |
Runs residual | 0.02328125 |
Runs probability | 0.0412953060011 |
Amino acid sequence | MKRGQDLDQMTPNVPFNGRILSSTGISPVSETFSGSQKLSLETDGGEDRREIKEKNGFIW KDTD |
Secondary structure | LLLLLLLLLLLLLLLLLLEEEELLLLLLLEEEELLLEEEEEELLLLHHHHHHHHHLLLEE ELLL |
PRMN | - |
PiMo | - |