NONHSAT093172
Revision as of 00:46, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT093172 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
822 nt |
Genomic location |
chr3+:169700657..169701727 |
Exon number |
2 |
Exons |
169700657..169700699,169700949..169701727 |
Genome context |
|
Sequence |
000001 aaaagagaaa aaaaaagatg gtgaaaagga agaaTCCAAA AAGGAGGAAA CTCCAGGAAC TCCTAAAAAG AAGGAAACTA 000080
000081 AGAAAAAATT CAAACTTGAG CCACATGATG ATCAGGTTTT TCTGGATGGA AATGAGGTGA GAGTAAGCCT ATAACTAGAA 000160 000161 GTTCAGTTTT CTATAGGAGT TTTTAGAAAG ATGTTTGATG CCTTCACTAA TAAAAGGAAA AATTTTGAGA AATCTAATTA 000240 000241 TGCTCTTAAA TGTATAAAAG CTACTCCATT TTTAAAAATC AATAATTTCT CTTATTTAGA TTTTTAAAAG TCAGATTTGA 000320 000321 CTGTGAGTGA TAGGAAACCT GAAATAAAAG CATCTTAATA CAAAATAGAT GCTTATTTCT TTTTTATCAG TGAAATCTGT 000400 000401 AGGTAAGCTG TACAGATACG TCAGCTCCAT GGTGGATCCC AGCTCTTCTT TTCTCCTCTG TCTGAGGCTT CTAGCTAAGG 000480 000481 TTaccttatg gtccagaatg actgccaatc ttatatctgc atcgaaaaga ggaaaggaga gtgaagaata tgtctcctct 000560 000561 ttaaggagac cagtttaagg acactgtcca gaaagctggt aatttcattt ctgcttgaat tccattggcc agaacatagt 000640 000641 cacatggtca tgcatatgag aagtaaaatc ttggaaatgc actttttata caggatgatt atttgcccag ccgaaatgta 000720 000721 gggtttccat tattatcaaa gaaaaaagag cagaatagga gatagctaca agtctctatc TCTTACAGAA TGTAAGTCAG 000800 000801 ACACATCACT TGAGGGGCTT AA |
Predicted Small Protein
Name | NONHSAT093172_smProtein_368:577 |
Length | 70 |
Molecular weight | 7787.1535 |
Aromaticity | 0.0869565217391 |
Instability index | 52.1550724638 |
Isoelectric point | 10.2130737305 |
Runs | 9 |
Runs residual | 0.0088965418281 |
Runs probability | 0.0554476044672 |
Amino acid sequence | MLISFLSVKSVGKLYRYVSSMVDPSSSFLLCLRLLAKVTLWSRMTANLISASKRGKESEE YVSSLRRPV |
Secondary structure | LEEEEEEEELLLLEEEEEELLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLHH HHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL LLLLLLLLL |
PiMo | oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiii iiiiiiiii |