NONHSAT093223

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT093223

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1645 nt

Genomic location

chr3+:171178401..171180045

Exon number

1

Exons

171178401..171180045

Genome context

Sequence
000001 CAGGCTTTTG CGGGCTCCTC GGGCCGAACC CGAAGGGGCT GTTCCTGAAC CTTGACTTGT TATCATAGGG ACCCAAGCTC 000080
000081 TATTTTTGTG TGGCCAATTC GTGCACTGCA GCAAAATGGC CCTTCAGTCG CGTCTTGGGG TTTCTCCTCG GTTCAAATGC 000160
000161 TCTCGCGCTG AGAAAAAGCC GGAGGAAAAA AAAGCGACAC CCTCCCTCCC CCATTAATTA TTTGTGGGGC CGGAGTAACG 000240
000241 CGGGCTGGTG CAACCGGTGC ATATAAGGAC TTGTGTGCAA GGAAGGGGAT CCGCCTCCAG GCGCGGAAAG AGTAGGGAAG 000320
000321 AAGCGCACAC GCACAGTGCA CCCAGCTGGG CGCTTCGGCA GTTTGCAGCT GCGGCGGGGT CGGGTCCACC CGCGGTCCCC 000400
000401 GGAATGCCGG ACGGCTGATC CCGGGTGCTG GTCACTCGCC GATTCGGGGC TGGGAAGGTT TGCCAGAAGC GGGAAAGATG 000480
000481 GGAGATCTGA GCGCTCTCTT GGCATCGCCA CACCCAGGAC TTGCTCGTGC CGCAATTCCC CACGGAAACA ACCGAGTTGA 000560
000561 AACGAGAAGC TTGCTCTCTG GGTGCAGTAG CTAGAAGGCT TCAGGTAACT CCAAAGCCAA CACTGGGTGA GGCAACACAC 000640
000641 GCCGCCTCAG GACTCAGCAT TTCTTTCAGG CTGCGTTTTC GTGGCAGACC TACCCAGATT GATGGAGAAA GTTTGGCTGG 000720
000721 CGGATAAGAA GTAACGCGGA AGATGTGTAC GTGAGAGCGA TTTCACTTCA CTCACTTTCT CATTTAAAGG TTGGATGTTT 000800
000801 TACAGTGGTA TACATGATTC TCCTTCTGTA ATCAAGAGTG GGAAGTCGCT TCCCCCAATC CCCGCGCAGC CCTTCTTCTC 000880
000881 CCGCCTTAGC CATGCAAAAT ACCTAGAAAG AAAACACTAA AACTGAACTT TTTTCCAAAT ACAGCAGTAG CTTTGAAAGC 000960
000961 ATTCTTTGCT CCTCTGTTAA CAGCAGAATG TAATTCTGAC CACTGCACTG ATGGTTTCTT AATCATGCAG TATGAAGATC 001040
001041 AGCTTCAAAA TAAGTCTTAT GAATGAATGA ATGAAAGCCA GTGCAGTTAG TTCATCATGA CTGCAGACAT TAGAGGACTT 001120
001121 TGAAACAACC TTTGGTGTAC ATTGTACTGT TTTTGTTACT GATATTGTAT GTATTCATAT GCATTGTGGA TCATGCACCA 001200
001201 TGAAACTTGA AAATTGTTCC AACATCTCAA TGGCCACAAC AGTTTGGTAG CTTTTGCCTG TAAACGTTGT ATGTAAACAT 001280
001281 TTGAACGTGT TATACTAAAT TACTAAACTC ATTTTTTACT AAAATCATCT GGTTCGACAT AGTAAGTAAC GTGCAGTAAG 001360
001361 CCACCACGTC GAAATGAAAA AAAAAAAACA GATTATTTCC CATCATTGTC TTTGTTTTTT TCTCTTCTGT GTTCCTGTTT 001440
001441 TTTTACCGTT CATCTAGACA ACAGGTTAAT GTATTGTCTC AGGGTTGAAA GAAGATAATT TAAGATCAAG TATTAAGATC 001520
001521 TATAAACAAC TATTTTTTTA AAACTGCAAA CATAAGGAAA TATGAGTTAA ATATTTTTTC CATGGAAAGC CTTCGTTTTA 001600
001601 TACTCATGAT TATATTTGAA ACATCACAAA CAGATCAACT TTTTT
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Predicted Small Protein

Name NONHSAT093223_smProtein_794:919
Length 42
Molecular weight 4655.3403
Aromaticity 0.121951219512
Instability index 62.1002439024
Isoelectric point 9.99468994141
Runs 7
Runs residual 0.00523716893611
Runs probability 0.0415247179953
Amino acid sequence MFYSGIHDSPSVIKSGKSLPPIPAQPFFSRLSHAKYLERKH
Secondary structure LEEELLLLLHHHLLLLLLLLLLLLLLLLLLLLHHHHHHHLL
PRMN -
PiMo -