NONHSAT093223
Revision as of 00:46, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT093223 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1645 nt |
Genomic location |
chr3+:171178401..171180045 |
Exon number |
1 |
Exons |
171178401..171180045 |
Genome context |
|
Sequence |
000001 CAGGCTTTTG CGGGCTCCTC GGGCCGAACC CGAAGGGGCT GTTCCTGAAC CTTGACTTGT TATCATAGGG ACCCAAGCTC 000080
000081 TATTTTTGTG TGGCCAATTC GTGCACTGCA GCAAAATGGC CCTTCAGTCG CGTCTTGGGG TTTCTCCTCG GTTCAAATGC 000160 000161 TCTCGCGCTG AGAAAAAGCC GGAGGAAAAA AAAGCGACAC CCTCCCTCCC CCATTAATTA TTTGTGGGGC CGGAGTAACG 000240 000241 CGGGCTGGTG CAACCGGTGC ATATAAGGAC TTGTGTGCAA GGAAGGGGAT CCGCCTCCAG GCGCGGAAAG AGTAGGGAAG 000320 000321 AAGCGCACAC GCACAGTGCA CCCAGCTGGG CGCTTCGGCA GTTTGCAGCT GCGGCGGGGT CGGGTCCACC CGCGGTCCCC 000400 000401 GGAATGCCGG ACGGCTGATC CCGGGTGCTG GTCACTCGCC GATTCGGGGC TGGGAAGGTT TGCCAGAAGC GGGAAAGATG 000480 000481 GGAGATCTGA GCGCTCTCTT GGCATCGCCA CACCCAGGAC TTGCTCGTGC CGCAATTCCC CACGGAAACA ACCGAGTTGA 000560 000561 AACGAGAAGC TTGCTCTCTG GGTGCAGTAG CTAGAAGGCT TCAGGTAACT CCAAAGCCAA CACTGGGTGA GGCAACACAC 000640 000641 GCCGCCTCAG GACTCAGCAT TTCTTTCAGG CTGCGTTTTC GTGGCAGACC TACCCAGATT GATGGAGAAA GTTTGGCTGG 000720 000721 CGGATAAGAA GTAACGCGGA AGATGTGTAC GTGAGAGCGA TTTCACTTCA CTCACTTTCT CATTTAAAGG TTGGATGTTT 000800 000801 TACAGTGGTA TACATGATTC TCCTTCTGTA ATCAAGAGTG GGAAGTCGCT TCCCCCAATC CCCGCGCAGC CCTTCTTCTC 000880 000881 CCGCCTTAGC CATGCAAAAT ACCTAGAAAG AAAACACTAA AACTGAACTT TTTTCCAAAT ACAGCAGTAG CTTTGAAAGC 000960 000961 ATTCTTTGCT CCTCTGTTAA CAGCAGAATG TAATTCTGAC CACTGCACTG ATGGTTTCTT AATCATGCAG TATGAAGATC 001040 001041 AGCTTCAAAA TAAGTCTTAT GAATGAATGA ATGAAAGCCA GTGCAGTTAG TTCATCATGA CTGCAGACAT TAGAGGACTT 001120 001121 TGAAACAACC TTTGGTGTAC ATTGTACTGT TTTTGTTACT GATATTGTAT GTATTCATAT GCATTGTGGA TCATGCACCA 001200 001201 TGAAACTTGA AAATTGTTCC AACATCTCAA TGGCCACAAC AGTTTGGTAG CTTTTGCCTG TAAACGTTGT ATGTAAACAT 001280 001281 TTGAACGTGT TATACTAAAT TACTAAACTC ATTTTTTACT AAAATCATCT GGTTCGACAT AGTAAGTAAC GTGCAGTAAG 001360 001361 CCACCACGTC GAAATGAAAA AAAAAAAACA GATTATTTCC CATCATTGTC TTTGTTTTTT TCTCTTCTGT GTTCCTGTTT 001440 001441 TTTTACCGTT CATCTAGACA ACAGGTTAAT GTATTGTCTC AGGGTTGAAA GAAGATAATT TAAGATCAAG TATTAAGATC 001520 001521 TATAAACAAC TATTTTTTTA AAACTGCAAA CATAAGGAAA TATGAGTTAA ATATTTTTTC CATGGAAAGC CTTCGTTTTA 001600 001601 TACTCATGAT TATATTTGAA ACATCACAAA CAGATCAACT TTTTT |
Predicted Small Protein
Name | NONHSAT093223_smProtein_794:919 |
Length | 42 |
Molecular weight | 4655.3403 |
Aromaticity | 0.121951219512 |
Instability index | 62.1002439024 |
Isoelectric point | 9.99468994141 |
Runs | 7 |
Runs residual | 0.00523716893611 |
Runs probability | 0.0415247179953 |
Amino acid sequence | MFYSGIHDSPSVIKSGKSLPPIPAQPFFSRLSHAKYLERKH |
Secondary structure | LEEELLLLLHHHLLLLLLLLLLLLLLLLLLLLHHHHHHHLL |
PRMN | - |
PiMo | - |