NONHSAT093312
Revision as of 00:46, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT093312 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5203 nt |
Genomic location |
chr3-:176004974..176042942 |
Exon number |
7 |
Exons |
176004974..176005817,176006882..176007862,176018318..176018527,176031566..176031819,176032065..176032721,176036216..176037373,176041844..176042942 |
Genome context |
|
Sequence |
000001 CACAAGAACT TCCAAACGCC TGAACCGCAG CGGCCAGGCG TTCCTCCAGA ACCTCCTCCC CCAGGAGCTT GCTGCAAGTG 000080
000081 CCAGAAATCT GACCACCAGG CCAAGGAATG CCTTCAGCCC AGGATTCCTC CTAAGCCGTG TCCCATCTGT GTAGGACTCC 000160 000161 ACTGGAAATC GGACTGTTCA ACTCACCTGG CAGCCACTCC CAGAGCCCCT GGAACTCTGG CCCAAGGCTC TCTGACTGAC 000240 000241 TCCTTCTTGG CTTAGCGGCT GAAGACTGAT GCTGCCTGAT CGCCTCGGAA GCCCCGTAGA CCATCACGGA TGCCGAGCTT 000320 000321 TAGGTAACTC TCACAGCGGA AGGTAAGTCC GTCCCCTTCT TAATCAATAC AGAGGCTACC CACTCCACAT TACCTTCTTT 000400 000401 TCAAGGGCCT GTTTCCCTTG CCTCCATAAC TGTTGTGCAT TTTGACAGCC AGGCTTCTAA ACCTCTTAAA ACTCCCCAAC 000480 000481 TCTGGTGCCA ACTTAGACAA TATTCTTTTA TGCACTCTTT TTTAGTTATC CCCACCTGCC CAGTTCCCTT ATTAGGCTGA 000560 000561 GATATTTTAA CCAAATTATC TGCTTCCCTG ACTATTCCTG GACTATAGCT GCATCTCATT GCTGCCCTTC TTCCCAATCC 000640 000641 AAAGCCTCCT TTGCATCCTC CTTTTGTATC CCCCCACCTT AACCCACAAG TATAAGACAC CTCTACTCCC TCCTTGGCGA 000720 000721 CCGATCACGC ACCTCTTACC ATCTCATTAA AACCTAATCA CCCTCACCCT GCTCAAAGCC AAGATCCCAT CCCGCAGCAC 000800 000801 GCTTTAAAAA GATTAAAGCC TGTTATCACT CGCCTGCTAC AGCATGGCCT TTTAAAGCCT ATAGACTGTC CTTACAATTC 000880 000881 CCCCATTTTA CCTGTCCTAA AACCAGACAA GCCTTACAAG TTAGTTCAAG ATCTGCGCCT TATCAACGAA ATTGTTTCGC 000960 000961 CCATCCACCC CGTGGTGCCA AACCCATATA CTCTCCTATC CTCGATACCT GCCTCTACAA CCCATTATTC TCAAACATGC 001040 001041 TTTCTTTACT ATTCCTTTGC ACCCTTAATC CCAGCCTCTC TTGGCTTTCA CTTGGACTGT TCTCCTCCTT TTCTTTTCTT 001120 001121 TTCTCCTCCC TCCCCTCCTC CTCCTCCTCC TTCTTCTTCT TCCTCTTCTT CTTCTTCTTT TAAATAGGGT CTCACTCTGT 001200 001201 CATCCAGACT GTAATGCAAC TTTTAGTAGT TCCCTACTTG CTGAGGTTTT ACCTCAGTCT TGGCCTTTGA TGAGTGACCA 001280 001281 AAATCTTTGC TTAGGGCACT GAGAGAAGGA ATAGTTTTAT TCCCATGAGG TTGGCCATTT AAATTCATAC TATATTTGGC 001360 001361 TTAGATTGAT TCTCAGTTAT TGTCATAATA AGTTTCTTGT TTATATGATG CACAGCGAAA TGAAAATGGT CAGTTGTTAC 001440 001441 TGTGGAATCA GATAGCTACT GAAAATTCAG GCATGCCAAT AGGTTCCTTT CTTGGACCTT CTCTTTTTCT CAATTGATAA 001520 001521 ATCTCAGAGT GTCTTTTCAG TGCCTCCACA TTTTCAGCTC GAACACAAAT AAGTTTCCAG TATAATGTCC TATTGCGCTT 001600 001601 CATCCCAACT TGCTTCCTCT TCTTCTTATA ATTATGCTTT CTCCTATCTC CATGATTATT GATGACATCT CACTCTCCTG 001680 001681 GATTATTTTC TTAACTGTTC TAACCAAATC TTGTAAGACT GAGATCAATT TTCACCTCTT TCCTAAAGCC ATGCATGTCC 001760 001761 TTCCCCAAAC TTCAGCCTGA AATAGTATTT CCAGTTTATG AATAGTACTT CTAGCATTTA TTCAGGAGTG AATTATGTCT 001840 001841 ATATCTTATA TTATTTAAAA TATCTTAAAA ACTTTTACAC CTACTTACAC TTCTAGTTTA ACACTTATCT AACTTTATTA 001920 001921 GAGGGTGCAG CTTGAAGGCA TACTTACTGT TATGGGCTGA ATCGTGTTAC CCAAAACTCA TATTGAGGTC CTAACTCCTA 002000 002001 GTATCTCCGA ATGTGACTGT ATTTGAAGAT AAGCGTTGTC AAGAGGTAAT TAAGTTAAAA CAGTGTCGTT ACATTGGGCC 002080 002081 TTAACCAATA TGACTAGTGT CTTTATGAGA AGGGGAAATT AGAAGGTAGA CACACGCAGA GAAAAGACCA TGTGAAGACA 002160 002161 CGGGAGAAGA CCGCCATGCA CTACCCAAGG AAAGAGACCT CAGAAGATAC CAACCTTGAT GATCTTGAAC TTCTAGATCA 002240 002241 CACTCTGCAG CAAGAAGGTC CTGAGCCTCT CATTGTGATC TCAACACTTT TATTACAGTG ATGAGCTCAA GATTGGGCAC 002320 002321 CTGTCTTCAG CTGTTTTTAT CTGGATGAGG TCCTATTTTT CTTTAAATGA ATGGATGATG AAAGCTATTT CTTTTCCCAT 002400 002401 GTAGTATAAG AACAAGAGAG CATGCAGGAG CCTCTGGCTG CCTTTTAGGG CCAAGAGTTT ACAGCTGACC TAAGAATCAT 002480 002481 AAGCAAAACC AAGAAAGAAA AGTTGAGAAG GATAAACCAG GGTGTGATCA CATTGCTTTA ACAAAAATAA AGCCACAATG 002560 002561 AAAACGGGTT TATCTTTAGC CTCTTCAGTA ACATAAACCA ATATATTCCC CTACCAGAGA GTCCCATTCT TTGATATCCT 002640 002641 AGCTTCTGTC AGGTGGTCTC TACAGAGGTG TGATTCTGAA TCCTGCTATA CAGTTATAGT AACTACCTCC TCTTGCATCC 002720 002721 TTCCCATTCC AGATGGTTGT GGCTGTTTTG TGTTGTTTCT AATCCCCAGA ATATCTCCCT GTGTTCTTTT TAACTTCTCA 002800 002801 GCTCTTCTTT CACATATGGT GCAGATCCAT ATATTAAATT CTCCTTGCTT GAAATACCTA GAGTCGTTTC TGTTTTCCTA 002880 002881 ACTGTACTAT GACTGCTTTA GCACTCTTAA AATGAAGAGA AAGAGAGAGA CACTCAGAGT GTACATGCAC AGAGGAAAGA 002960 002961 CAATGTGAAG ACACAGTGAG AAGGTGGCCG TCTGCAAGTC TAGGGGCGAG GCCTCAGGAG AAACCAAACC TGACAACACT 003040 003041 TGGATATTGG ATTTCCAGCC TCTGGAACTA TGAAAAATAA AGATCTGTTT TTCAAGCCTT CATTTTTTAT GGCAGCCCTA 003120 003121 GAAGACTATT ACAGATGTCA TTTAACTATG AGTCTATGAT GATGTCTAAT TTGAAATTCA TGAGCTTTGC AACATCTTCA 003200 003201 CATCAGGACA AATAACCCCC CTGCTGTTGA AATCACTTGC ATAATTTATA ACGTTCAAAA TTGGAATTGC ATCATTGCCT 003280 003281 CCTTTGCAAT TACCCTGTAG TCAAGCCTTT CACCTTACTG AAAGGTCTTT AATTTTTCTT GATTTTTAAG CATTTCTCAA 003360 003361 TTTCTAATGG GCTCATTTTG ACGCAAAAGT CAAATGCAAA TAATTTGTTG ATAATTTAGT GGCAATTCAC TATTTGCTAT 003440 003441 GATCATTTCA AACACATTAG AAACACATTG CCATATTTTA TATTCTTTAG ACCTCCTATC TTTAAAATAA AAGTGTGTGT 003520 003521 GTGTGTGTAA TTTTATATAT GTGTGATTTT TTTTTTCAGG CTAAAATGAA ACAATAACTT GTCTGGCTGA TTAGATTTCC 003600 003601 TTGGAGGTGA ACTTTCACAA ATAGCCAAAA ATGTTTGCAA GTAAAGAGTA TAACTGGGCT TTTAAATAAC TCCTCTAAAA 003680 003681 TCAAAATGAA GAACAAAAGC TTCCTTCCTT TCAGAAAGTA ATCTGCAACC ACTCTCATGC ATTTGTGTGC TTTTTAAAAA 003760 003761 AAATATTGAG GATGGAAGGG AAGCATGGTA CATGTAAGTT CAAATCTTAC CTGTCACATG CCTAATCTAT GAATCCAAAT 003840 003841 GGATTTTTTC ATTAGTGGTT TTTAGACTAA AGTAACGTGA ATTAATTTAA CAAAGTAAAT GATGACATTG GAAACTAATA 003920 003921 AAGAACATAG ATACAGAACT TTTTCCTTTA TTTTGCATGC CTCACTTACT ATTTTAAATG AGTAAACCTC CCTCATGGCA 004000 004001 TCCATGAGAT GAGAGACAAT TCAAGGCATT TAAGGCAATC TTAGAGAAAC TTTCTTCACT ACTTTCTACC TTTTATTTTC 004080 004081 TCAATTCTTT CAAAAACGAG TCAACAGATT TCTGACATTT TAAACTTATT GTATTGAAGA TACATAAAAC GCCTGCTCCC 004160 004161 TTTACTCTCC TCTGCATGTA TGAAAATGAA AATCAGGCTA TTTCCATAAC CAACAAACTT TATTTCTTAT GAAATATTTC 004240 004241 AGATACAAAT GGTAGTAAGG CTCCTATTAA AACAAAAAAA TTTTACCCTC ACCACTAAAA AAAGAAATCA ACATTACCAA 004320 004321 GGTTGATCTT GAGTATCTCT CCTCTTCTCT CCACCAGAGG CATAGAATTA CACAATTTTA ATGACTTGAG CCCAAAAGAC 004400 004401 AGTAACAAAA CAGAAGAATT GGCAACTCCA TAGAGACTGC ATTTCATAAC TGGAATTCGT CACCTATGGA AGCAGACAAC 004480 004481 AGAGGATAAT TAAATGAATG ATCACATAAA ATGAACTGAA GTCACTGAAC ACTTAAACAG CTATCGCATG TTAATCATAA 004560 004561 TTTGTATCAG CTCTCATTCT TTGATCTTGG GATGACTTTC TTCTGCATAA TAATGAGGTT ATATTACTTG TGTTGACATC 004640 004641 ATTTAAAGAA GTGAATACAG TAGACTGCAA CTGGATTTGA ATCTAGATTT TTTTCTTCAA CACAGTCATC TAGCTTTAAG 004720 004721 AAATCATTTA AAAGGTTGAA TGTGAAACAG CTCTGACCAT TGTAAGAGTA AACATAAAAT GTACAAAGAA TTATTTTAAT 004800 004801 GGTTTGATTA TCTGTACTTT AGAGATAGTT ATTATATCCC ATCTTTGATT TGTGCATGTT CACTTAACTC CCTTTAAATG 004880 004881 TCTCGACCAC AGCTCATGTT ACTTTACTAT CATTTTTGGG TAATATTTTT ACTTCTCTGG AGTTTTAACC ATTTTAATGA 004960 004961 CAAAAAGTTC ACATATGTAT GAAAGCAATT AAATATATTA GATTTGTAAG AACTTACAAA TATGCAGTAC TTACATATTA 005040 005041 CAAATAATGC AGTAATTTGT TATGACATTT TGAGAGAAAT ACACTGTCAT CATGCTTAAT TTGATAAGGA AAGTGAAAGT 005120 005121 TGTCTTATAT CATCACAATT AAATAATGTT GCTTAAAGTT GTAAATATGT GACATTGGAA AAGTAACTGA TGAAAGGTAT 005200 005201 AAA |
Predicted Small Protein
Name | NONHSAT093312_smProtein_4877:4981 |
Length | 35 |
Molecular weight | 4399.1853 |
Aromaticity | 0.294117647059 |
Instability index | 42.7529411765 |
Isoelectric point | 9.39910888672 |
Runs | 5 |
Runs residual | 0.0390915860015 |
Runs probability | 0.0233527645293 |
Amino acid sequence | MSRPQLMLLYYHFWVIFLLLWSFNHFNDKKFTYV |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHHLLLLLEEEL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | ooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii |