NONHSAT093404
Revision as of 00:47, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT093404 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1077 nt |
Genomic location |
chr3+:179291022..179292998 |
Exon number |
2 |
Exons |
179291022..179291257,179292158..179292998 |
Genome context |
|
Sequence |
000001 TGAAGTTGAT CTGTAAAATC AGTAGGTTCT GTATACTAAA GTATTAATTG TTAAGTCATA GAAACAATTT CTCAAAAGAT 000080
000081 GCTATATTCA TCTTCAACTA TGCATTATTT CCAAGTTACT AATCTTATAT TCTAGTTGAA GACTGGGATA GTTTCCAAGC 000160 000161 TATTTTGGAT CATACCTACA AAATGCATGT CAAATCAGAA GCCAGTCTCC ATCCTGTTCT CATGTCAGAG GCACCGTGGA 000240 000241 ATACTAGAGC AAAGAGAGAG AAACTGACAG AGTTAATGTT TGAACACTAC AACATCCCTG CCTTCTTCCT TTGCAAAACT 000320 000321 GCAGTTTTGA CAGCGTATCC TTGAAAGAGT AATACCTTTC CTCTTGAAGT ATGTACGATA CTAATGAATA TGATAACTCT 000400 000401 GGGAGAAGAC ATACGCCAAT TATTGCTTGT TCCGAAGTTG TTTTTTTCCC TTTTCTCTTG CTTTTTAGCT ATTCATCTTT 000480 000481 TAGTATTTCT TGTTAGAACT GATGATACAC CAGAAGGTAT GAGGGAAATA AAATAACACT CAAATTCTGA GTGTTAAGAC 000560 000561 GTTTTTGTTT TTGTTTTTAA GAAGGGGCAT GTGGATAGAA GGCAATGTTT TAACCAGTTG GCTTAGGTGA ATTGAAAGAT 000640 000641 TGCCATTTTA AAATCTCCTT CCCTTCCAAT ATCATAGAAA ACTGGAAATT GGCTGTAAAT TCATTCTCCT TCAAATTTAG 000720 000721 TCAGTCATCA AATCCTGCCT GTTCTTCCCT GCTATTTGCT TCTCTCTGTC CTACTGCCAC AGCATTAGGT GGAAGCTATT 000800 000801 TCCAGGATTA CTGAAGCACG TCCTCTTGTC TGCCCATTCT TTACGCTGTT GCTCTAATAA TCTTTCTAtt tttatttatt 000880 000881 tatttatttg gtagagatgg agtttcgcca tgttgcccag gctgctctcg aactcctgga ctcaagcgat atgcttgcct 000960 000961 cagtctccca aagtgctggg attacaggca tgagccaccg tgcccagccT CTAATAATCT TTCTAAAGTG CTAGTCTGCT 001040 001041 TTAAGCCAGA ATCGTCTTCT ACATTTCTTC CTTTATT |
Predicted Small Protein
Name | NONHSAT093404_smProtein_182:343 |
Length | 54 |
Molecular weight | 6149.1495 |
Aromaticity | 0.11320754717 |
Instability index | 71.3018867925 |
Isoelectric point | 7.94879150391 |
Runs | 7 |
Runs residual | 0.0281868384722 |
Runs probability | 0.0394806571278 |
Amino acid sequence | MHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYNIPAFFLCKTAVLTAYP |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHLLLLHHHHHLLEEEEELL |
PRMN | - |
PiMo | - |