NONHSAT094018
Revision as of 00:49, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094018 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3660 nt |
Genomic location |
chr3+:193409183..193415315 |
Exon number |
2 |
Exons |
193409183..193409921,193412395..193415315 |
Genome context |
|
Sequence |
000001 TAATGTAAAT CTACCTCTAG TGGCTCTGGT ATTTTTAAAC TTATTTATAG CTGGCAAAGT ACTTTTTTGT ATGTATTTTT 000080
000081 ATAGCACCAT TGCACTTCTC atgtttgttg caagcatctc ccacagcttc ctttgtcttt taattttatg acatataaat 000160 000161 aaaagtatac atttcaatat ggccatattg attgatcttt tcctttgtaa ctcttactac tttatattta aaaagtcatt 000240 000241 tcccagtcta aggccacctc tattttcttt tagtttttta aaatggtttc attgttttat atttgcctat gatccaGACA 000320 000321 TTAGtaactg tgggttctta attgggcttc agagaatctg agaattcctt aaaattctct acataattgt acatgtactt 000400 000401 aatacatgct tttttccatg ttaagagtcc agagtttttg ttagatcctc aaaggggtca gtCAGTCTCT CCTCCCACTT 000480 000481 CCAAAAAATG TCTGAGACCT ACTACTATAA TCCATCTGGA CTTTATTTGG GTAAAAGGTG GTATGGTGAG ACTCATATTT 000560 000561 TTCTTTTTCC CGCAAATAGT TAAGTATACC AACCATTTAG TAAATAATTA CCTCCTGATT TGTGATACCT TTGAAAAATA 000640 000641 AATGTTTTTC TTTATTTTTA TCTCCACAGA GAAAGTTAGA GAAATTCAAG AAAAACTTGA TGCTTTCATT GAAGCTCTTC 000720 000721 ATCAGGAGAA ATAAATTAAA ATCGTACTCA TAATCAGCTC TGCATACATC TGAAGAACAA AAACATCAAC GTCTTTTGTC 000800 000801 CAGCCTCTTT TTCTTCTGCT GTTCCACCTT TCTAAACATA CAATAAAGTC ATGGGATAAA AATAATCGAT GTATGTTACG 000880 000881 GGCGCTTTAA CCATCAGCTG CCTCTCGAAT GGAAGAACAG TGGTAATGGA TTAACATCCT ATTTTGTTGT ACTAAAGTGA 000960 000961 CAAATCGGAA TAATATAATT GGTATGGCCA TTAGGTTCAG TCCTTGAAGA TAAGAAACTT GTTCTCTGTT TGTTGTCTTA 001040 001041 TTTGTGGTGG CACTCGTTTA ATGGATTAAC TGAGGTTGCT CAATGTTCAG TTTCTTTTCC AGAAATACAA TGCTAGGTGT 001120 001121 TTTGAAATAA AACTTATATA GCAATTGTTT AAAGTTATCA ATTGTATATA AAATCACAGT AGCCTGCTAA ATCATTGTAT 001200 001201 GTGTCTGTAG TATTCTATTC CCAGAAACTA TTTGACCATG ATAATTCAGT TTATATTCAC CACATGAAAG AAAAATGGGT 001280 001281 AACAGAAGAA CCCTTAAAAC AGGTTAATTT GGATTGTAAC GTTCAGTGAA AGAAATTTCA ACCCTTCATA GCCAGCGAAG 001360 001361 AAATTTGCCT TGGAAGCCAA GTCAGTACCA GCTTACCTAT TTGATTCAGT TGCTGTTTTC TCACTCTCTA TATCCATTTG 001440 001441 AAATTGATTT ATTTTAGATG TTGTATACTT ACGTTAGGCT TTCTGTTAAT AGTGGTTTTT CTCCTGTTGA CAGAGCCACC 001520 001521 GGATTATGAC ACAGGATGAG GAAGATTAAG GATAATCAAT TGACTAATTT CATTTAGAAT ATTATCAAAC ATTTCAACTA 001600 001601 GGTATCAGAA AAAGGCTTTC TTTCATAAGA CTATTTTAAA TAGAAATTAT TTCAACAATT AAAGTAATGT TGACCATCCC 001680 001681 CCTCTCAGCT GAATAAAGAA AAATTTAGTT CAATTTATTG CAATTTAATT ACAATACTAC CTTCACAACA TTTTCATGTG 001760 001761 ttttaaataa atatttttta attGGCTAAA GGACATTCAA GCAAAGAAAT GCTTTCTTTA CTTAAAATGT CTATCTCATT 001840 001841 TGCTGCCTTT TCACTAAGCC TTTACTTTGT TAATAAAAGT GTCCATTGTG TGATGTTTTT GATTTTACAG TTTGCTAAAT 001920 001921 CTTATTTTCT TGGAGTTGCT TTTTGGTAAC AGCCCCATTG CTACTCCCCA TTTTATTGTT TTACATCAAT GCATGCTTCG 002000 002001 TTGTGATCCC TCAAGATGTA ACACTTGGTA TGCTCGGTTG AGGATATGAA AAAATACTTC CGAAACCAGG AATTCAATGT 002080 002081 ATGTTTGTTT TATACTGTTT GATAAGAAAA GTAGGTCCAG CCTTAAGCAG CACAGATGCG CTGGTAGATG CATAGTCAGG 002160 002161 AACTTTTTTT ATTTCTTTTA GGTCTAGGGA CAGGAGTGAA TAGAAAGGGA GGAGAGCTCT ATTATGTTCT ATACACAGAT 002240 002241 TAGGAGATGA CCTTACTGGG TACACCCCTC TAACCAGTGC TTACAGGTTA ATGCATGTTA ATGAATATTT TTGCAGTTGT 002320 002321 AAAGCATAAC AATTACAACT ACACATCTAT TTCTAAAGAA TAAAACAGGA CCATATTTAT TTACTTCTGT CAACTATAGA 002400 002401 AAGAAAGACC TTCAGCTGTA TTTCCACAGA TTTCTCCCAA GGAAAAGGCT AATATTAGTC ACTACTGTTA TCACATCCCT 002480 002481 TTGTATAAGT TTTAAAAAGA GATGGAGGGA GATCTTCATT TCTTTGAGGA GATCAGTATT GTAACGTATG TGAATAGATG 002560 002561 ATAACAATTA ATATTACTAA AAGTCCCACA TGAGAGTCCT GACGCCCTCT CCATGCCCCA CAGTAATGTG GCTTCTTTCA 002640 002641 TGGGTTTTTT TTTCTTCTTT TTAGCTGATC TCATCCTAAG CATGCTTTAT TTTTCCTTGA AAGCTAGGTA TTTATCAACT 002720 002721 GCAGATGTTA TTGAAAGAAA ATAAAATTCA GTCTCAAGAG TAAACCCTGT GTCTTGTGTC TGTAGTTCAA AAGTCAGAAA 002800 002801 TGATTCTAAT TTAAACAAAA AGATACTAAA TATACAGAAG TTAAATTCGA ACTAGCCACA GAATCATTTG TTTTTATGTC 002880 002881 AGAATTTGCA AAGAGTGGAG TGGACAAAGC TCTGTATGGA AGACTGAACA ACTGTAAATA GATGATATCC AAACTTAATT 002960 002961 TGGCTAGGAC TTCAATTTTA AAAATCAGTG TACCTAGGCA GTGCACAGCA CGAAATAAGT GGCCCTTGCA GCTTCCCCGT 003040 003041 TTAACCCACT GTGCTATAGT TGCGGGTGGA ACAGTCAACC TTTCTAGTAG TTTATGATAT TGCCCTCTTT GTATTCCCAT 003120 003121 TTTCTACAGT TTTTTCCGCA GACTTCTTTC TGCAAATTAT TCAGCCTCCA AATGCAAATG AATGATATAA AAATAAGTAG 003200 003201 GGAACATGGC AGAGAGTGGT GCTTCCCAGC CTCACAATGT GGGAATTTGA CATAGGATGA GAGTCAGAGT ATAGGTTTAA 003280 003281 AAGATAAAAT CTTTAGTTAA TAATTTTGTA TTTATTTATT CTAGATGTAT GTATCTGAGG AAAGAAATCT GGTATTTTTG 003360 003361 CTTTCCAATA AAGGGGATCA AAGTAATGGT TTTTCTCTCA GTTCTCTAAG CTGGTCTATG TTATAGCTCT AGCAGTATGG 003440 003441 AAATGTGCTT TAAAATATGC TTACCTTTTG AATGATCATG GCTATATGTT GTTGAGATAT TTGAAACTTA CCTTGTTTTC 003520 003521 ACTTGTGCAC TGTGAATGAA CTTTGTATTA TTTTTTTAAA ACCTTCACAT TACGTGTAGA TATTATTGCA ACTTATATTT 003600 003601 TGCCTGAGCT TGATCAAAGG TCATTTGTGT AGATGAGTAA TTAAAAAATA TTTAAATCAC |
Predicted Small Protein
Name | NONHSAT094018_smProtein_392:640 |
Length | 83 |
Molecular weight | 9687.3798 |
Aromaticity | 0.158536585366 |
Instability index | 44.9548780488 |
Isoelectric point | 9.34283447266 |
Runs | 13 |
Runs residual | 0.0226348854398 |
Runs probability | 0.0609432962375 |
Amino acid sequence | MYLIHAFFHVKSPEFLLDPQRGQSVSPPTSKKCLRPTTIIHLDFIWVKGGMVRLIFFFFP QIVKYTNHLVNNYLLICDTFEK |
Secondary structure | LEEEEEEEEELLLLEELLLLLLLLLLLLLLLLLLLLLEEEEEEEEEELLLLEEEEEEELH HHHHHHHHHHLLEEEEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH HHHHLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTT TTTToooooooooooooooooo |