NONHSAT094235
Revision as of 00:50, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094235 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2455 nt |
Genomic location |
chr3-:195439503..195442279 |
Exon number |
3 |
Exons |
195439503..195439789,195439922..195440230,195440421..195442279 |
Genome context |
|
Sequence |
000001 ttttgtgtct ggattctctc tgttaacact gtgtctgtga gactcactca cgctgtgtgt agtattatgc ttcatccttt 000080
000081 tttgttgttg catagtattc cactgtataa atataccaca atttatttgt ctgttttcct attgctgtgc atttggattg 000160 000161 ttttgttttt cactattttg aataaagctg ctatgaacat ccttgtgtat gtcttGGGTA TAcagatggt cctggcttac 000240 000241 aatgattgga tttaaaattg tttgacttta tgatgggctt atcagggtat taaatgtgtt tctgacttac agtatttttg 000320 000321 acttaccacg tgtttattgg gacgtaaccc cttcctaaga tgaagagcat ctgTATACAT CCAGAATcct gtggagcaac 000400 000401 tcataaccca tgaggaatgg aagccgacag acagactcat ccccaggaca ggtggttctc actacatctc ataaagcttc 000480 000481 ttagaagatc ttacaggatt gagcaaccag ccagccacag caggggccaa ctggataaca cgtctttgca taggctctcc 000560 000561 ctctgtccct gtcaccctcc ccttttccta accttgttcc ttgggattat gttttgaaat aaattaTTCA GAGAAATGAA 000640 000641 GCCAAAGCTG ACCCATTAGC CAATAGCTAG GTTCTGTGAT GACAGAGCTT CTGGGCTATA ATCGTTTACT GAGAAGCCAG 000720 000721 CGTTCCTGAG GGGATAATGG CTCGTTCCAT TCAgctgcag cataggagtg agggcagggc attagcagaa gataacacca 000800 000801 gaaacgtgct ctggggcctg ttgatgactt tctgtgccaa gcacagacat ttagccttta ttctgtatgt gatgggaagc 000880 000881 cagtgccagt ggtgggtttg agcagggaaC CAGCAACCAG TGGTGGGTTT GAGCAGGGAA CCAGCAATAC TCAAGCTCTG 000960 000961 CTTGGATGGA GGCCAGTCAG GGAGGAGTTA GGGCAGGAGG ACCAGTCAGG GAGGAGACTT AGGGCAGGAG GACCAGTCAG 001040 001041 GGAGGAGACT TAGGGCAGGA GGACCGGTCA GGGAGGAGAC TTAGGGCAGG AGTACTGGTC AGGGAGGAGA CTTAGGGCAG 001120 001121 GAGGACCGGT CAGGGAGGAG ACTTagggca ggaggaccgg tcagggagga gacttagggc aggaggaccg gtcagggagg 001200 001201 agttagggct ggaggacggg tcagggagga gacttagggc aggaggaccg gtcagggagg agttagggct ggaggaccgg 001280 001281 tcagggagga gttagggcag gaggactggt cagggAGGAG ACTTAGGGCA GGAGGACCGG TCAGGGAGGA GACTTAGGGC 001360 001361 AGGAGGACCG GTCAGGGAGG AGACTTAGGG CAGGAGGACT GGTCAGGGAG GAGACTTagg gcaggaggac aggtcaggga 001440 001441 ggagttaggg ctggaggacg ggtcagggag gagttagggc tggaggaccg gtcagggagg agttagggca ggaggacagg 001520 001521 tcagggagga gttaggggag gaggaccggt cagggaggag ttagggcagg gggattggtc agggaggagt tagggcaggg 001600 001601 GGATTGGTCA GGGAGGAGTT agggcaggag gaccggtcag ggaggagtta gggcaggagg accggtcagg gaggagactt 001680 001681 agggcaggag gactggtcag ggaggagtta gggcaggagg accggtcagg gaggagttag ggcaggagga ccggtcaggg 001760 001761 aggagactta gggcagggGG ATTCGTCAGG GAGGAGTTag ggcaggagga ccggtcaggg aggagttagg gcaggaggac 001840 001841 tggtcaggga ggagttaggg tcagggagga gttagggcag gaggacgggt cagggaggag ttaggggagg aggactggtc 001920 001921 agggaggagt tagggctgga ggaccggtca gggaggagtt agggcaggag gaccggtcag ggAGGAGTTA GGGCTGGAGG 002000 002001 ACCGGTCAGG GAGGAGTTag ggcaggagga ccggtcaggg aggagttagg gcaggaggac cggtcaggga ggagacttag 002080 002081 ggcaggagga ctggtcaggg aggagttagg gctggaggac cggtcaggga ggagttaggg caggaggact ggtcagggag 002160 002161 gagttagggt cagggaggag ttagggcagg aggatcggtc agggaggagt tagggcagga ggaccggtca gggaggagtt 002240 002241 agggcaggag gaccggtcag ggaggagtta gggcaggagg acaggtcagg gAGGAGACTT AGGGCTGGAG GACTGGTCAG 002320 002321 GGAGGAGTTA GGGCAGGAGG ACCAGTTAGG AGGCAGTGAC TTAGGACTTC AGCAGTGGCA CTAGAAAGGG GATGGATATG 002400 002401 AACGACATTG CAAAGTAAAA CTAGAGAGAC ggccgggcac agtggctcac tcctg |
Predicted Small Protein
Name | NONHSAT094235_smProtein_416:616 |
Length | 67 |
Molecular weight | 7827.0236 |
Aromaticity | 0.0909090909091 |
Instability index | 60.0621212121 |
Isoelectric point | 9.49005126953 |
Runs | 7 |
Runs residual | 0.0445472690982 |
Runs probability | 0.0196204607969 |
Amino acid sequence | MEADRQTHPQDRWFSLHLIKLLRRSYRIEQPASHSRGQLDNTSLHRLSLCPCHPPLFLTL FLGIMF |
Secondary structure | LLLLLLLLLLLLHHHHHHHHHHHHHHLEELLLLLLLLLLLLLLLLLLLLLLLLLHHHHHH HHHHLL |
PRMN | - |
PiMo | - |