NONHSAT094799
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094799 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4766 nt |
Genomic location |
chr4+:2561696..2599219 |
Exon number |
14 |
Exons |
2561696..2562125,2562216..2562773,2563431..2563847,2569035..2569455,2574878..2575252,2575449..2575692,2583677..2584245,2584768..2584873,2584928..2585303,2589081..2589129,2590738..2591206,2591242..2591299,2597811..2598056,2598768..2599219 |
Genome context |
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Sequence |
000001 TTTTTTTGAG ATGGAGTTTC ACTCTTGTTG CCCAGGCTGG AGTGCAGTGG TGCGATCTTG GCTCACTGCA AGCTCTGTCT 000080
000081 CCCTGGTTCA AGCCTGCCGA GTAGCTGGGA TTACAGGTGC CTGCCACCAC ACCCAGCTAA TCTTTTGTAT GTTTAGTAGA 000160 000161 GATGGGGTTT CGCCATGCTG GCCAGGCTGG TCTCAAACTC CCGACCTCAG GTGATCCACC CGCCTCGGCC TCCCAAAGTG 000240 000241 TTGGGATTAC AGGTGTGAGC CACCGCGCCT GGCCTGTGCA GGCTTTTCTT TCCAGTGAGT TCTTCTGTCT TTGCCTGATT 000320 000321 CGCCCCTTTC TGAGATGGAG ACCATGCGCT GTCCCCATGG GAAGCATTTC TTCACCGTCC GAGGCCAGGC TGTACCTTCC 000400 000401 CTTCTGAGTT CCTGTGGTGC CTGTCCTGGC AGCCAGGCCA TTTGATGTGA GCTTCTGCAT TTCTTCCCTC TTCACCTTTC 000480 000481 TTTGGGACGT CTTTTGTCTT TTGATTTGGA AGAAAGCATC TATCCATTTT TCCAAAGTTA ACTGCGTGCT CCAGGGGTTG 000560 000561 TTAACTGATG GTTTTTAATG AGTCTGTTAA TTCATGGAAA CTCAGTGCAG AATTTATGTG TAGTACGTTA TCTTGAGGCT 000640 000641 TCTGCAAAAC AGCTTTGTCG TTTCTCTCCT GTGTCTTGAA TCTTTCCACT TCTGTTGGGT TATTTTCCTT TGTATTCAGA 000720 000721 TTGTGTCTTT CTTCCCTTCC TCTTCCTCAG TGTTTTTATT TTTAGTTTTT GTGGAGGCAG GAGCTCACCA TGTTTCTCAG 000800 000801 GCTGGTCTCG AACTCCTGGG CTCAAGTGAT TCACCTCACC TGCCTCAGCC TCCCAAAGTA CTGGGATTAC AGGCATGAGC 000880 000881 TGCTGCACCT GGCTCCCTTT GAGCTTTTGG CACATGACTG TGATATCCAC CTTTCTAGAA CTTTCTTTGC CTTCCTGTGC 000960 000961 ATGGCACCAT GCCATTGTAG TTCTCCTCCC AGGCTGGTCT CGAACTCCTG ATCTCAAGTG ATCTGCCTGC CTCGGCCTCC 001040 001041 CAAAGTGCTG GGATTACAGG CGTGAGCCAC CGTACCCGGC TGAGATTTCT GATGACAGAA ACTCAAATGG GTTATCAGTA 001120 001121 ACCCTCTAAC ATTGTGGATA TTTATTAGAA TGTTGTTTGA GGCCTTTTCC CCCCATAGCT GTGGCTTGTG AACTCAACTT 001200 001201 GTGTATGTTT AGATCAAACT CTTCTTCCCA TATTACAAAA TAGTGCTTAG GTATTATTGG TTTGTTTGCT AAGTAACTTA 001280 001281 TCAAAAGGAG TTTTGTCTAA AGATCTCAGG TCATCTGTAT GTGGTTGTGC ACTGGACACA GTTTCCACAT CTGTCAGGTA 001360 001361 AGAAGATTGT GTTAGATAAT CTCGAAGGCC TTTTATAACT TTATGATGAG ATTGAAAACC AGTTTTCATA ATTTAGCAAG 001440 001441 TGCAGCCAAT GATATACTTC TACTTCGCTA TATGTATCTT TGAGTGGGAC CTTTTTCAGC AAAGACTGCC AGTAAAACTG 001520 001521 ACTCTCTAAA TAATTGAATT TAGAGTACTC CTAAGATCTG GTTTTAACAC AAAGTATTCA ACCAAGATTT TTAAAATAAT 001600 001601 GAGGTACAAT CATATTGATC TCCATAAGTT TTTTTGTCAT GATTTTTGGT GACACAACAA GTTTTGTGTT GTTATTAAAA 001680 001681 AGTATGTGAG AAGATGATTT TATTTTCATC TCATTGTATG TTTTTATATT TTGTGTATTT TTTTAATGAA CATAAATTAC 001760 001761 ATTCATTAAC TGCTGCAGAG TGCCTTCTGC GTTACCAGTA GGAGTTACAG GGTGATCTCA AAAGCCCTCC CTCTCCTGAA 001840 001841 TGTGCTCTAC TCTCAGAGGT TTGTGTATCT GGACATGTGT GAATCTGTGT TTTAAGAAGC CCATGAGGCC AGGTGCAGTG 001920 001921 GCTCACACCT GTAATCCCAG CACTTTGGGA GGCTGAGGCT GGCAGATCAC CTGAGGTCAG GAGTTCGAGA CCAGCCTGGC 002000 002001 CACCATGGTG AAACCCGTCT CTACTAAAAA TGCAAGAATC AGCCAGTGCG TGGTGACGGG CACCTGTAAT CCCAGCTACT 002080 002081 CTGGAGGCTG GGGCAGGAGA ATCACTTGAA CCCAGGAGGC GGAGGTTGCA GTGAGCTGAG ATCGTGCCAC TGCATTCCAG 002160 002161 CCTCAGCGAC AGAGTGAAAC TCTGTCTTCA AAAAAAAAAA ATGGAGCTGA CTTTCCAGCT GGGGAGGCTG ATGGACAAAG 002240 002241 CCTGTCCCGT GGCGGGAAGA GGTAGGGAGG GGTGGTCAGG AAAGGCCTTG CCAGTGTGGT GATACTTGAA CAAGGCCTGA 002320 002321 GGGAGATGAG GGGTGCACCC GGCTCTTTGT TTTATCTGGG GGAAGAAGTT TCTAGTCAAA GGGAGACAAA CAGTACAAAG 002400 002401 GCCTCGTCTG GGAGCACCCT TAGGTGTCCA GGTAACAAGG AGACCGCTCT TCTCCTTTAC TTTTAAAAGA TTCTTTTTCT 002480 002481 GGGTATGGAA GTCGTAGTTA AAAGCTGTTT TTTTCTTTCA AGATTTTAGA GAAATTACTC TCTTCTGGTT TTTATGGCTT 002560 002561 CTCACAAGAA TCCTGCTGTA ATTGTTTTTG TTCTTCCATG TGTAATGTTT CTTTTATCAC TAGCTGCTTT CAGTCTCTCC 002640 002641 TCTCCTCCTC CAGCCCCCTT TCTTTTCGAG ACAAGGTCTT GCTCTTTTGC CCAGGCTGAA GTGCAGTGAC ATGATCACAG 002720 002721 CTCACTGCAG CTTCGACCTC CCAGGCTCAA GTGTTCTCCA CCTCAGCCTC CCAAGTAGCT GAGACCACAA GTGTGGTCTA 002800 002801 ATTTTTTAAA CTTTTTTGTA GAGATGAGGT CTTGCTATGT TGCCCAGGCT ACTCCTGAAC TCCTGGGTTC AAGCAATCCT 002880 002881 CTCACCCCAA CAAGTGCTGG GATTACAGGC ACGAGCCCCA TCGTACTTGG TCAGTGTTTA TTTCCTTCCT TCCTTCTCCT 002960 002961 TCCCTCCTCT CTCTCTTTCT TTCTTATTTT CATAGTCTTA GTTGCGCATG ACTTTCACTG CAACCTCCAC CTCCCGGGTT 003040 003041 CAAGCGATTC TCCTGCCTCA GCCTCCAAAG TAGCTGCAGG CACCTGCCAC CATGCCCAGC CAATTATTGT ATTTTCAGTA 003120 003121 TGACCTCATG ATTTGCCTGC CTCGGCCTTC CAAAGTGCTG GGATCATAGG CGTGAGCCAC TGCGCCCGGC CAAGTCTCAG 003200 003201 TTTTAGACAT GTCTGGTAAC CCTGGATTTC AGAGGTGCAG CTGTCTCAGT TCTTCTGCCT TTTCCCTGGC TATAATTTTG 003280 003281 GACTCAGTGT GTAATCCTGC CCCTTTTGCA GGACTAGGTC TCTCCTGTCC CTCTCTTCCC TTCCCCCTGC TGCCCCCAAA 003360 003361 TTAGGACTTT TGTTTCTGAG TGGAGATTGA GAGGAAGGAT TTGAGTGGAA TTTCTTTCCC CTCCTTCCTG GCTTCTGGTC 003440 003441 CCCTCCCTGA GTTCTGCGCT ACTGTCTTTG CTTCTTCGGG CTCTTTCGAT CTTCATTCAT GAGGGACCTG CCCTCATGAC 003520 003521 CCATGCACTT CCCATTAGGC CCGTAGATAT TTGTGCTGTC CCATGACAGA GCAGGGATAT GAAACTTGCC CTGGCATCCA 003600 003601 GACATGTTCT GAGGCTGGCT CAGATATTTG TTTTCTTCTG GATAAGTAGC ATCAAAACAA ATAGTAATTA TATTATTTAA 003680 003681 TAGACTTAAA ACACGGCAAC TACATTTGTA TAGGAAAAAC CACATTAGTA ACATTACATG GAGAAAAGCA TTTTATGTAA 003760 003761 CTATAGTTCC AGCAAATACC ACTATGCCTT CATTAATGCC TTAAAACCAT CTTATTTACA TCTGTAGAAC CACTGGCCAT 003840 003841 TTAATAGGGC AATTCAGGAG CAATCATTAA AAACAGTTGC AGTTTTCATT AGGTTTTCTC TGTTTATTCT AATATGTAAA 003920 003921 CTGAAATTAA AGTAAATCCT TCAGAGTTCA TTCTTTAAAA AAAGTAAGTC CTAAGGAAAA CTGTTATATT AGCTATTTAA 004000 004001 AAGGATGCTG GAGTTTCCAT GGAACAGCCT TGAAATTATA AATTGCTAGA TATTTACTCT GTAAGATTAC TCCTTTTAGT 004080 004081 TTTGGCATGA ATCATAGGAC ACCACCCTAC CCTGCTGGGG ATTATTGTCT TCTGTGCAGA AGTGAACGGA AAGACTCATC 004160 004161 ATTCTTAGAG AGTGGAATTA AGACTGCGAG CAAATTGGCC CTTTCCATGG CTCCCAAGGG CAACAGCGTG CTGCACCTGC 004240 004241 CACTGTGGGT GTGCCCGGAC TGCCGCAGGA CCGTGGAGAA GGAGGAGAGG CATGGCGGCC TTGACCAGCC AGTGTTGGGG 004320 004321 GAGTCCTGGT GACAATCTGA AGAGCGCATC CCCACTGCCT GGTGTGGGTT TCCATCTTTA CTGGCCTTGG AGGCAAGCCC 004400 004401 CATCTCCAGG GCCAGTTTCT ATCCTTGGGG TCTCATTGTC AGAATTACTT TCTCACTCGG CCCCTCCCGC ATGTCCCGCT 004480 004481 TTCCTGCTGT AATTCTCTTC CTAGCACTTA TTTCTAACAT ACTATGTATT TTACTTACTC ATTTGGTTTG CTTTCTTCTT 004560 004561 CATTAGAATA TAAACTCTAC AAAGACAGCT ATTTTTATGG TTTTCTTTGT GTGGTTTTTT TGTTTGTTTT TTTACCAATA 004640 004641 CCATTTTCTT TGCTTTTTGT GGTGGTTGGT TTGTTTTCTC ATTAAACTTT ATCAGCTCTT CTTCCGACTC CAGCCCTGCT 004720 004721 CTTGTATTTT AGCCTGCCTC TGCCCTTGGG AACAGGCTTC TGCTGT |
Predicted Small Protein
Name | NONHSAT094799_smProtein_161:406 |
Length | 82 |
Molecular weight | 8749.0747 |
Aromaticity | 0.111111111111 |
Instability index | 68.250617284 |
Isoelectric point | 9.60565185547 |
Runs | 9 |
Runs residual | 0.03106859619 |
Runs probability | 0.0643977310644 |
Amino acid sequence | MGFRHAGQAGLKLPTSGDPPASASQSVGITGVSHRAWPVQAFLSSEFFCLCLIRPFLRWR PCAVPMGSISSPSEARLYLPF |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEELLLLLHHHHHLLHHHHHHHLLLLLLLL LLLLLLLLLLLLLLLEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL LLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTii iiiiiiiiiiiiiiiiiiiii |