NONHSAT096138

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT096138

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2118 nt

Genomic location

chr4-:40544540..40631546

Exon number

2

Exons

40544540..40546523,40631413..40631546

Genome context

Sequence
000001 ATTTTGGTTT TACATTAAAA AGAAGGCGGA CGAGAAGATG TTGTAGGTGA CTTCCTAGCT GTGTTAAGTT GCTCCTGGGC 000080
000081 TGTGAATGGT GTTAATTTCT GAAGTGGGCG GCTCCAAAAA CTTAACAAGG AAAGctcagg taacggaggc cttggaaaga 000160
000161 gactctgcgt caggtcaccc agcAGAGATC AGCAATCCTT GGCTCACTGA GGAGGTTTGG TAAGTTGGCA TCATCTTCAC 000240
000241 CATGACTCAA ATGCACATAA CCCGGTGGCG GGGGAGAAAA GTGGGTGAAC ATCACATAGC GACATCAAAA TGCTAATCCT 000320
000321 TGCCACCCCC CTTTGTTTTT GTTTTTACAA ACGTATTGTT GTTGTGTTTG TTTAATTTAC TAGGCCAGAG TGCCCTGTAT 000400
000401 GTTTGTAAGC ACAAATGTCC TCAGAGGACT CCCACAGCCA AAAAGAATGA CAGAGGTGTA TTTGAATGAT TTCAGTGAAA 000480
000481 CTCTTTTAAT ACTGATTTCA TGAAAATGTC TGGTGGTGGG TTCTTCCTGT AGCATTACTG CATATCATCA ACTAGAATGC 000560
000561 ATCCCCCGCC CTTCACACAT ACAATTTAAC ATGTCTGAAA TTCGGTGCAC CTTATGCAAA CAGGTCTGGT GAAATACAGC 000640
000641 ATTTCTCTGA TAATCCCCAA ATGACCAGCA TTAAGTATTC CCTACCTTCT ATTTTTCACA CAATACAAAT GTTTTTTTTT 000720
000721 TTTTTTTCTT TTTAGAGGGT TGAATTTTTA AGGGTAAGAA ATGCATAGTC TGATGAGTAG ATGATTAGTA AGAAGTCTGT 000800
000801 GCTTACCAAA GAAAGAATTT AGGtttcctt ttttgttttt gtttttgaaa tgaagtcaca ttatcaccca ggctggagtg 000880
000881 cagtggcacg atctcggctc actgcaacct ctgctcctgg gtttatgtga ttctcctgcc tcagcctccc gagtagctgg 000960
000961 gactgactac aggcacgcac catcacacct ggctaattat tgtattttta gtcgagatgg ggtttcacca tgttggccag 001040
001041 gctggtctca aactcctgac ctcaagtgat ctgcccacct cagcctccca aagtgctggg attataggca tgagccacca 001120
001121 cacccagccA GAATTTAGTT TTCTAATACT GAAAGAAAAA CTTTTTTTTT TGGTGACTTC ATATGATAGT CTTGAGATGA 001200
001201 GCACCCCAAG GACCTTGTAA ATAGTGGGCG CTGGCACTCA GAACAGCCCA TGTGAGATAA TGAAGCAGCC TTCCAGACAT 001280
001281 AAGATCCCAG AATCAGACAC TTATCCAAGG TTCCCCTCCT GCAATCAGCG GGTAGGAGTT TGCAATGAAA ACACTCCATG 001360
001361 CTATGTCCCA GAGTGACTCG TTCATTTATC CGTGAAAGCA GAGTCCAAAT CCATGTTCAT GTTAAATGTG CAGAAAAATA 001440
001441 GCATCTTGAG AGTTAATGCC ACAGAATGGG CATGATTCCC TAAGCCACAT TTGCCTGATT GAGACAGACT TTAACATTTG 001520
001521 CAAAACCTCC ATGTTATGAG ACCCTATAGG TGATAGTACA TGATCTGTAG GGATACAAGT AAatccatta acaaacattt 001600
001601 tttgagcacc tgctatgtgc caggctctgt gctaggctct gtgctagatg tagcataatt aagaagtaat taggacagaa 001680
001681 aggattgctg tccccacagg gctactttag tagtcacaga agatattaaa taatacatta acagagtaat gagtgggctg 001760
001761 atgaagaact gtaaggagtt aagagtctaa aacaagaaaa cctaagctag ccagagtggc tcacgcctgc aatcccagca 001840
001841 catagggagg ccagggtgag aggatcactt gagctcagga gttcaagacc aacctgggca acataatgag acctgtctct 001920
001921 acaaaaattt aaaaattgtc atcccattct ctactggaaa ataaaaaatt agctgggtat gctggcacgc acccatagtc 002000
002001 ccagctactt gggaggctgc agtgagagaa ttgcttaggc ctgggaggtt gaggctacag tgagccaaga ttgcatcact 002080
002081 gcagtctagc cagggcaaca gagcaagacc ctatctcg
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Predicted Small Protein

Name NONHSAT096138_smProtein_1016:1219
Length 68
Molecular weight 7338.3527
Aromaticity 0.089552238806
Instability index 40.6552238806
Isoelectric point 6.37579345703
Runs 12
Runs residual 0.0357896381965
Runs probability 0.0383250897958
Amino acid sequence MGFHHVGQAGLKLLTSSDLPTSASQSAGIIGMSHHTQPEFSFLILKEKLFFLVTSYDSLE
MSTPRTL
Secondary structure LLLEEELLLLLEEELLLLLLLLLLLLLLEEELLLLLLHHHHHHHHHHHHHEEEELLLLLE
ELLLLLL
PRMN -
PiMo -