NONHSAT096138
Revision as of 00:57, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT096138 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2118 nt |
Genomic location |
chr4-:40544540..40631546 |
Exon number |
2 |
Exons |
40544540..40546523,40631413..40631546 |
Genome context |
|
Sequence |
000001 ATTTTGGTTT TACATTAAAA AGAAGGCGGA CGAGAAGATG TTGTAGGTGA CTTCCTAGCT GTGTTAAGTT GCTCCTGGGC 000080
000081 TGTGAATGGT GTTAATTTCT GAAGTGGGCG GCTCCAAAAA CTTAACAAGG AAAGctcagg taacggaggc cttggaaaga 000160 000161 gactctgcgt caggtcaccc agcAGAGATC AGCAATCCTT GGCTCACTGA GGAGGTTTGG TAAGTTGGCA TCATCTTCAC 000240 000241 CATGACTCAA ATGCACATAA CCCGGTGGCG GGGGAGAAAA GTGGGTGAAC ATCACATAGC GACATCAAAA TGCTAATCCT 000320 000321 TGCCACCCCC CTTTGTTTTT GTTTTTACAA ACGTATTGTT GTTGTGTTTG TTTAATTTAC TAGGCCAGAG TGCCCTGTAT 000400 000401 GTTTGTAAGC ACAAATGTCC TCAGAGGACT CCCACAGCCA AAAAGAATGA CAGAGGTGTA TTTGAATGAT TTCAGTGAAA 000480 000481 CTCTTTTAAT ACTGATTTCA TGAAAATGTC TGGTGGTGGG TTCTTCCTGT AGCATTACTG CATATCATCA ACTAGAATGC 000560 000561 ATCCCCCGCC CTTCACACAT ACAATTTAAC ATGTCTGAAA TTCGGTGCAC CTTATGCAAA CAGGTCTGGT GAAATACAGC 000640 000641 ATTTCTCTGA TAATCCCCAA ATGACCAGCA TTAAGTATTC CCTACCTTCT ATTTTTCACA CAATACAAAT GTTTTTTTTT 000720 000721 TTTTTTTCTT TTTAGAGGGT TGAATTTTTA AGGGTAAGAA ATGCATAGTC TGATGAGTAG ATGATTAGTA AGAAGTCTGT 000800 000801 GCTTACCAAA GAAAGAATTT AGGtttcctt ttttgttttt gtttttgaaa tgaagtcaca ttatcaccca ggctggagtg 000880 000881 cagtggcacg atctcggctc actgcaacct ctgctcctgg gtttatgtga ttctcctgcc tcagcctccc gagtagctgg 000960 000961 gactgactac aggcacgcac catcacacct ggctaattat tgtattttta gtcgagatgg ggtttcacca tgttggccag 001040 001041 gctggtctca aactcctgac ctcaagtgat ctgcccacct cagcctccca aagtgctggg attataggca tgagccacca 001120 001121 cacccagccA GAATTTAGTT TTCTAATACT GAAAGAAAAA CTTTTTTTTT TGGTGACTTC ATATGATAGT CTTGAGATGA 001200 001201 GCACCCCAAG GACCTTGTAA ATAGTGGGCG CTGGCACTCA GAACAGCCCA TGTGAGATAA TGAAGCAGCC TTCCAGACAT 001280 001281 AAGATCCCAG AATCAGACAC TTATCCAAGG TTCCCCTCCT GCAATCAGCG GGTAGGAGTT TGCAATGAAA ACACTCCATG 001360 001361 CTATGTCCCA GAGTGACTCG TTCATTTATC CGTGAAAGCA GAGTCCAAAT CCATGTTCAT GTTAAATGTG CAGAAAAATA 001440 001441 GCATCTTGAG AGTTAATGCC ACAGAATGGG CATGATTCCC TAAGCCACAT TTGCCTGATT GAGACAGACT TTAACATTTG 001520 001521 CAAAACCTCC ATGTTATGAG ACCCTATAGG TGATAGTACA TGATCTGTAG GGATACAAGT AAatccatta acaaacattt 001600 001601 tttgagcacc tgctatgtgc caggctctgt gctaggctct gtgctagatg tagcataatt aagaagtaat taggacagaa 001680 001681 aggattgctg tccccacagg gctactttag tagtcacaga agatattaaa taatacatta acagagtaat gagtgggctg 001760 001761 atgaagaact gtaaggagtt aagagtctaa aacaagaaaa cctaagctag ccagagtggc tcacgcctgc aatcccagca 001840 001841 catagggagg ccagggtgag aggatcactt gagctcagga gttcaagacc aacctgggca acataatgag acctgtctct 001920 001921 acaaaaattt aaaaattgtc atcccattct ctactggaaa ataaaaaatt agctgggtat gctggcacgc acccatagtc 002000 002001 ccagctactt gggaggctgc agtgagagaa ttgcttaggc ctgggaggtt gaggctacag tgagccaaga ttgcatcact 002080 002081 gcagtctagc cagggcaaca gagcaagacc ctatctcg |
Predicted Small Protein
Name | NONHSAT096138_smProtein_1016:1219 |
Length | 68 |
Molecular weight | 7338.3527 |
Aromaticity | 0.089552238806 |
Instability index | 40.6552238806 |
Isoelectric point | 6.37579345703 |
Runs | 12 |
Runs residual | 0.0357896381965 |
Runs probability | 0.0383250897958 |
Amino acid sequence | MGFHHVGQAGLKLLTSSDLPTSASQSAGIIGMSHHTQPEFSFLILKEKLFFLVTSYDSLE MSTPRTL |
Secondary structure | LLLEEELLLLLEEELLLLLLLLLLLLLLEEELLLLLLHHHHHHHHHHHHHEEEELLLLLE ELLLLLL |
PRMN | - |
PiMo | - |