NONHSAT096721
Revision as of 00:59, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT096721 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2626 nt |
Genomic location |
chr4-:68926328..68929015 |
Exon number |
2 |
Exons |
68926328..68927569,68927630..68929015 |
Genome context |
|
Sequence |
000001 CAGTTGGTGC GGTCCATGGT GAGCTCATCA TGGCGATTGA AGGTGGAGAG AGAACCTGTG GAGTACATGA ACTTACCTGT 000080
000081 TTTAGAAAAG TATCTCCAGA GGCAGTTGGG TTTTTGTCAG CTGTTTGGGT GTTTATTATC CTGATGCTGC TTCTTTTTCT 000160 000161 CTATATTAAT AAGCAGTTCT GTTTTGAAAA TGTTGGAGGG CTTCCAGATC TTGGTTCAGA ATACAGTACA AGGAACAATT 000240 000241 CACAAGATAA AATGTGTCTG TGACTCCCAA ATGAGCGTGT CAGAAATGTC TTGTAGTGAA AGTACATCCG CATGTCAGTC 000320 000321 TCTCGAAGAC GGGTCAGTTC CAGAAATTCT CATTAGCCTG CTTTATAATG CCACAAATGG GAGACTATCA GCAGAAGTGA 000400 000401 TAAAAGGCAG CCACTTAAAA AATTGGGCAG CAAACAGACC ACCCAATACA TATGTTAAGT TAACTCTACG GAAATCCACG 000480 000481 GATCAAGAGA TGTCCAAATG CAAGATATCC ATCCGCAGAG GGCGGCCAAA TCCAGTATAC AAGGAAACTT TTGTTTTCAA 000560 000561 AGTGACCCTA TTTCAGCTTT CTCATGTGAC ACTCATGCTG TCTGTGTATA ACAAAAGCAG CATGAGAAGA AAGATGATAG 000640 000641 GCTGGATTTA TTTAGGTCTC AACAGCTCTG GAGAAGAACT CAATCACTGG ACTGAAATGA AAGAGTCAAA AGGACGGCAA 000720 000721 GTACGTAGAT GGCAGGCGTT GCTAGAGTCA CGATGAATAC AATAAGCAAA CAGTTACCAT CCAATGCAGC ATATTTCTAA 000800 000801 TTACAACATT ACTGTTTCTA CCAAGTCGCC ATTGGAAGAG CTGTTCTTTG AAGAATCATA TTCAACCTTT TACCAAAATG 000880 000881 CTTTAAGTTC TATGGAAAGA ACATCTAATA CTGAGATAAA TGAAGAAAAT ATGTGTATCT GATAGAGCTT GTTTGGGAAA 000960 000961 CTGAGAAACG TACATTATCA TTGTTAAACT AACAGTCCTC CAGAAATTTA ATAAGATGTT TTTGATTTGA AGTTAATTTT 001040 001041 AATTTAGCAA AAGAGCCGGT AATTTTATGA AAAATCAAAA TTATAAGTGA TTTTAAAAAC CAGAGTTTTA GTCGCAATAT 001120 001121 AATTTTAATA TCACTCTACA TATTATTTAT AAAACATAGT TTGGCCAGTC CCTGGTGTTT GTAATGTTCT TTAATATGAA 001200 001201 AAAGTAGTCC TCCAACCCTA TCGTAAGTCA TATCTAATGG CGAAGGGTTT CAGTCACATT GAAAATTGTT TTATTTCAGA 001280 001281 CATGTTCCTT TTGTGCACTT AGTTTCATTG TGCCTCAGTT CCTCTCTATA GCACTAAATC TAAGTGCAGA CAAGCATTCG 001360 001361 TTTTCATACA GGAATGTTTT TAATATACAA AGTCACTGTG CTGGTCCCTT GCAAGTCTTT AGACAGGTTG TACTGTAGAA 001440 001441 CTACGTAACT TTCTGTTGAA AGCACTTCCT GTATTCTTGT ATTTCAATGT AGGAAGCTAG TAGAGCAAGA CTTTACTTTA 001520 001521 AAATTTCTTT CAGTGATTGA CTCTTCAAAA ATTGCAGTAA TGTGAAAATA CATTTTTTTT TACAAACTGA AAACACAGCA 001600 001601 GATAAGCTGT AGAAAATGAA AAACGATTCA ATTTTAATTT TCTGCTCTGA GTATTTAGTA ACCAACACTG CCTAAAGCAG 001680 001681 GTAGCATCCA AAATAAGAAA CTATTCTCTC TCTAAATCTT CACTCTTACT TCAATTTACA TTTGTGATAT AAAGACTATG 001760 001761 CAGTTCTCAG TTTAAATCGG AACATCATGT TAAAAACAGT TCTGAGATTC CTTACGAAGT TTCCAATAAC TTGTGACTAG 001840 001841 ACTTTATGAA ATTTACGGAT AAAGTTCTTC AACATGATGT TATCTTGTGC CTTTCATGTA AGTTGAATTT GCTCATACGG 001920 001921 CTTGAAAGTT GTATTTGCAA AATTAAGCCT TCGATTTTTA TAAATGCAAC GATTCCTCAG AACAGTGTCG CAAGATCTTT 002000 002001 ATTTCCTCCG AAGTATGTAA AAGTTGTATG ATGTGCTAAT TTTGTAAATG GCAAGTCACT TTCATTTGTT TTTATATTTA 002080 002081 GAAACTCTAA TTAATCAGGA ATATTATAAG CTGTTTTCTT TATAATTTTG CTTCTTACCT AATGTATCAT TTTATGCATA 002160 002161 TACTTTATTA AATAGAGTAT GTTTTATATA TATTAAAAAT AGTTTCTTTT TTCTCCTTCT CATTTCTAGT TCAAATAGAC 002240 002241 AAAAACATAC TATTTACCAG TTACTAAAAA GCAGTATATC ATTGCTCCTA GTCCCAAAAA AGTACTATAT ATTATTATAA 002320 002321 ACTAGAACTT GTTATTACCA TAATAACAAA ACAATGCATA GATGTTACTT CAGCTTGGAT ATACTGAAAG GCCTTAAAAG 002400 002401 AAATCCAAAA AGACCGTGAA ATTCTGTATT TTTTCATTTA AAAAAAGCAG CTCTATGCAT TCATACACAT GAATTATAAG 002480 002481 AAAAAATACA AAAGGTATAT TGGATGACAT GAGGTTTGAG AATGTGTTTT ACAGGGCTGC ATTAAAGGGA AAAATTCATA 002560 002561 TTTTATTGTT ACATCAATGA GCTTTCTCCA GGATTTTTAC AATAAACGAG TAGGAATTAG AACCTG |
Predicted Small Protein
Name | NONHSAT096721_smProtein_29:262 |
Length | 78 |
Molecular weight | 8652.0287 |
Aromaticity | 0.116883116883 |
Instability index | 46.887012987 |
Isoelectric point | 5.16021728516 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.036935331053 |
Amino acid sequence | MAIEGGERTCGVHELTCFRKVSPEAVGFLSAVWVFIILMLLLFLYINKQFCFENVGGLPD LGSEYSTRNNSQDKMCL |
Secondary structure | LLLLLLLEEELLLLLEEEEELLHHHHHHHHHHHHHHHHHHHHHHHHLLLEEELLLLLLLL LLLLLLLLLLLLLEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTToooooooooooooo ooooooooooooooooo |