NONHSAT097288
Revision as of 01:02, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT097288 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1110 nt |
Genomic location |
chr4-:87834419..87835970 |
Exon number |
3 |
Exons |
87834419..87834986,87835118..87835541,87835853..87835970 |
Genome context |
|
Sequence |
000001 AATGTCACTG CACCAGTTTT TATTAGAGCC AATCACCTAT CGTGCCTGGA ACAGGGATCA TACCCAGATT GCCCTCAGTT 000080
000081 CCAATAATCA CCAAGTGCAC ATCTATAAGA AGAACGGAAG AAGAAGAACG GGAGCCGGGG GGTGAAAGCT CATGAACTCA 000160 000161 AGGAGCACAA CGGACATATC ACAGGTATTG ACTGGGCTCC CAAGAGCGAC CGCATCGTCA CTTGTGGGGC AGACCACAAT 000240 000241 GCCTATGTCT GGAGTCAGAA AGATGGTGTC TGTAAGCCAA CCCTGGTGAT CCTGAGAATT AACTGTGCAG CTACTTTTGT 000320 000321 GAAGTAGTCC CCACTAGGGA ACAAATTTGC TGTGGGAAGT GGAGCACGAT TCATTTCTGT TTGTTACTTT GAGTCTGAAA 000400 000401 ATGACTGGTG GGTGAGCAAG CACATTAAAA AGCCAATTCG CTCCACAGTC CTCAGCTTGG ATTGCCATCC CAACGACGTT 000480 000481 TTGCTGGCAG CAGGATCATG TGACTTCAAA TGCAGACTGT TTTCTGCCTA CATTAAAGAA GTaaaaaaaa GTGGATGAAA 000560 000561 AGCCAGTCAG TATGCACTGG GGCAGCAAGA TGCCCTTTGG GCAGCTGATG TCAGAGTTAG GTGGCAGTGG CACTGGTGGC 000640 000641 TGGGTCCACA GGGTCAGCTT CTCTGCCAGT GGGAGCCGCC TGGCCTGGGT CAGCCACAAC AGCACCATGT CTGTTGCTGA 000720 000721 TGCCTCAAAA AGTGTGCAGG TCTCACACAG AGTTCCTGCT GCTCCTAAGT GTTTCATTTG TCTCAGAGAA CAGAGTGGTG 000800 000801 GCTGCTGGCC ATGACTGCTG CCCAACGCTC TTTTCGATGA CCGAGGCTGC CTGACCTTCA TCTCCAGGTT GGACGTTCCA 000880 000881 AAACAGAGCA TCCAACGCAA CATGTCTGTC ATGAATGCTT TTGCAACATG GACAAGAGGG CCACGACTGA GGACCGCAAC 000960 000961 ACGGTGTTGG AGATGCTGCA CCCGAATAGC ATCACTCAAG TCTCTATTTA TGAGGTGGGC AAGCAAGATT GTCGCAAATT 001040 001041 TTGCACTACT GACATCGGTG GAGCCATGAC AATTTAGGAT TTCAAGACTC TCGAGTCTTC CATCCAGGGC |
Predicted Small Protein
Name | NONHSAT097288_smProtein_719:853 |
Length | 45 |
Molecular weight | 4826.5754 |
Aromaticity | 0.0681818181818 |
Instability index | 47.3340909091 |
Isoelectric point | 5.98712158203 |
Runs | 8 |
Runs residual | 0.0187165775401 |
Runs probability | 0.0324368486133 |
Amino acid sequence | MPQKVCRSHTEFLLLLSVSFVSENRVVAAGHDCCPTLFSMTEAA |
Secondary structure | LLLHHHLLHHHHHHHEEEEEELLLEEEELLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |