NONHSAT097545
Revision as of 01:03, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097545 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1880 nt |
Genomic location |
chr4-:100869245..100871456 |
Exon number |
2 |
Exons |
100869245..100870097,100870430..100871456 |
Genome context |
|
Sequence |
000001 GGAGCAGGGA AGGCGGGAGA CAGCGCAGTT TGAATCGCGG TGCGACGAAG GAGTAGGTGG TGGGATCTCA CCGTGGGTCC 000080
000081 GATTAGCCTT TTCTCTGCCT TGCTTGCTTG AGCTTCAGCG GAATTCGAAA TGGTAAACTT CGCAGAGACG CTCGATGACT 000160 000161 CCGCGGGTTT TTGCCGGCGA GAGAAAAACC CGTTACACAG AGGGATGGGG GTGAAGTGGC GACGGTTGGG AACGCGCGGA 000240 000241 GACAGGATTT AGAAGAGTGG GGGGAGGTGT TTTGTCGGCT GCTAGCGGAG CAGCCTCGGA TCTCGCggcg ggcggcgacg 000320 000321 gttgggtggc gcgcgcagcg ccgctggggg ccggcgggcg gaggcgcgcg gccgtggcga gcgcgcggcg gggggcgaac 000400 000401 gggcggggtc gcccctgcgg cgcgccgcgg gccggagacc ccggcagggt gcggggacgc gctcgcggcg ggacgcgccg 000480 000481 cggtggggga tgggcgcgcc gcCTTGGTAA TTCTATATTC TCCGTTCCTC CTCCGCTCGC GGGCGTGTGC GCGCCGCAGG 000560 000561 CTGGCGGTAA GGCTGGAAAG GACTCCGGAA AGGCCAAGAC AAAGGCGGTT TCCCGCTCGC AGAGAGCCGG CTTGCAGGTC 000640 000641 AGTAGTTGTT CGTGCAGTCT GGGAGTCATG ATGTTTTTCT TTGCATTTCC TTTTTTGTTA TTCATCGCTC TCGATGGGCG 000720 000721 TTTTGTGTAT GCGTGGGTGA TGCGGTGTCG CGACTTGGGC TGCCCATACG ATAAATATGG GGGGGAGGAA TCACGTGTTT 000800 000801 CGATGTCGGG ACGCGTTGCT GCGCCCGTGC CCCTTGCTTT GGCGCGCATA TAATTTCCCC ATCTCTAGTT CTCATTTTTG 000880 000881 TGCATTTATG TTTGTGTATG CTTAAAATTT AAGTTCCCAG TGGGCCGTAT TCATCGACAC CTAAAATCTA GGACGACCAG 000960 000961 TCATGGACGT GTGGGCGCGA CTGCCGCTGT GTACAGCGCA GCCATCCTGG AGTACCTCAC CGCAGAGGTA CTTGAACTGG 001040 001041 CAGGAAATGC ATCAAAAGAC TTAAAGGTAA AGCGTATTAC CCCTCGTCAC TTGCAACTTG CTATTCGTGG AGATGAAGAA 001120 001121 TTGGATTCTC TCATCAAGGC TACAATTGCT GGTGGTGGTA TGTTAACTTC TAACATTTTA AAAAATTTCT TCAGAGGAAG 001200 001201 GAATTTTTTG CTGCTTTTAA TTAGTTTTTC CAGGAGAGGA AATTTAAGTA TATTTTCAAT GATGGAAGTA TGGTTGTATC 001280 001281 ATGAAATTTG ATTTATATGT ATAACTCAAT GAATTTTTAC TTCATACTTG AGCTGCATGT TTTTAAAGAT ACCTTTCAAG 001360 001361 TTGAACAGTA TACACTTTCT TGGTTTCAAA TACTGTGATT TTTTAAAAAA TCTTAAGTAG AATTAATTCC TGTCACTCTC 001440 001441 CTAGGTGTCA TTCCACACAT CCACAAATCT CTGATTGGGA AGAAAGGACA ACAGAAGACT GTCTAAAGGA TGCCTGGATT 001520 001521 CCTTGTTATC TCAGGACTCT AAATACTCTA ACAGCTGTCC AGTGTTGGTG ATTCCAGTGG ACTGTATCTC TGTGAAAAAC 001600 001601 ACAATTTTGC CTTTTTGTAA TTCTATTTGA GCAAGTTGGA AGTTTAATTA GCTTTCCAAC CAACCAAATT TCTGCATTCG 001680 001681 AGTCTTAACC ATATTTAAGT GTTACTGTGG CTTCAAAGAA GCTATTGATT CTGAAGTAGT GGGTTTTGAT TGAGTTGACT 001760 001761 GTTTTTAAAA AACTGTTTGG ATTTTAATTG TGATGCAGAA GTTATAGTAA CAAACATTTG GTTTTGTACA GACATTATTT 001840 001841 CCACTCTGGT GGATAAGTTC AATAAAGGTC ATATCCCAAA |
Predicted Small Protein
Name | NONHSAT097545_smProtein_776:904 |
Length | 43 |
Molecular weight | 4951.8027 |
Aromaticity | 0.190476190476 |
Instability index | 44.7904761905 |
Isoelectric point | 9.60760498047 |
Runs | 8 |
Runs residual | 0.0143158529234 |
Runs probability | 0.123167284932 |
Amino acid sequence | MGGRNHVFRCRDALLRPCPLLWRAYNFPISSSHFCAFMFVYA |
Secondary structure | LLLLLLLHHHHHHHLLLLLHHHHHLLLLLLLHHHHHEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToo |