NONHSAT097560
Revision as of 01:03, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097560 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
737 nt |
Genomic location |
chr4-:101367177..101439165 |
Exon number |
6 |
Exons |
101367177..101367404,101368690..101368728,101386580..101386696,101396195..101396266,101401074..101401196,101439008..101439165 |
Genome context |
|
Sequence |
000001 TTTTCCATTT GCTAATAAGG CCCTGCCAGG CTGGGAGGGA ATTGTCCCTG CCTGCTTCTG GAGAAAGAAG ATATTGACAC 000080
000081 CATCTACGGG CACCATGGAA CTGCTTCAAG TGACCATTCT TTTTCTTCTG CCCAGTATTT GCAGCAGTAA CAGCACAGGT 000160 000161 GTTTTAGAGG CAGCTAATAA TTCACTTGTT GTTACTACAA CAAAACCATC TATAACAACA CCAAACACAG AATCATTACA 000240 000241 GAAAAATGTT GTCACACCAA CAACTGGAAC AACTCCTAAA GGAACAATCA CCAATGAATT ACTTAAAATG TCTCTGATGT 000320 000321 CAACAGCTAC TTTTTTAACA AGTAAAGATG AAGGATTGAA AGCCACAACC ACTGATGTCA GGAAGAATGA CTCCATCATT 000400 000401 TCAAACGTAA CAGTAACAAG TGTTACACTT CCAAATGCTG TTTCAACATT ACAAAGTTCC AAACCCAAGA CTGAAACTCA 000480 000481 GAGTTCAATT AAAACAACAG AAATACCAGG CTAAAAATTG GCAGGCACTA GAGGAAAAAC AGCAAAACAA GACAAAAACA 000560 000561 GTGCATCCAG TCAGAGAAGA CTGATGCAGT TCTGGGAAGA GATTTTTTTC CCTCTGCTTC ACAGATTGAC TATCAAGGAG 000640 000641 AAGTCAGAGT TGAAGAATTG GGAAGCAGCC AAATTGTCAG TTCTCTTTAA GGAGGGACTG AAGGATCCTT CATTTTGTTT 000720 000721 AAATAAATTT TATTTAC |
Predicted Small Protein
Name | NONHSAT097560_smProtein_434:583 |
Length | 50 |
Molecular weight | 6044.9475 |
Aromaticity | 0.0816326530612 |
Instability index | 51.7204081633 |
Isoelectric point | 10.1683959961 |
Runs | 6 |
Runs residual | 0.0396028681743 |
Runs probability | 0.017694164753 |
Amino acid sequence | MLFQHYKVPNPRLKLRVQLKQQKYQAKNWQALEEKQQNKTKTVHPVRED |
Secondary structure | LLLEEELLLLLLEEEHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |