NONHSAT097815
Revision as of 01:04, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097815 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2341 nt |
Genomic location |
chr4+:111337054..111339660 |
Exon number |
2 |
Exons |
111337054..111337164,111337431..111339660 |
Genome context |
|
Sequence |
000001 ATGTTATGTA AAGAAGCCAC CAAGAAGAGC AAAGAAAAGG AGCCAGGGAT AGCAGCTCTT CCTCAGGGAC ACTTGACTTT 000080
000081 CAGGGATGTG GCTATATAAT TCTCAGTGGA GGAGTGGAAA TGCCTGTACC CTGTGCAGAG GCCTTTATAC AGGGACGTGA 000160 000161 TGTTGGAGAA CTACAGGAAC CTAGAGTCTG TGGATAGCTC TTTAAAATCC ATGATGGAGT TCTCATCAAC AGGGCAAGGC 000240 000241 AATGGGGAAG TGTTCCACAT AGGGATTTTG GAAAGACATG AAAATCATCA CACTGGAGAT TTTTGCTTCC CAGAAACCGA 000320 000321 GAAAGATATT CATGACTTTG AGTTTCAGTG GCAAGAAATG GAAAGAAATG GCCATGAAGC ACCCATGACA GAAACCAAAG 000400 000401 AGTTAACTGG TAGTACAGAC TGACATGATC AACGGCATGC TGGAAACAAG CCTATTAAAG GTCAGCTTGG ATTAAGCTTT 000480 000481 CATTTGCATC TGCCTGAACT GCACATATTT CAGACTGAAC AGAAAATTGG TAATCAAGTG GACCAGTCTA TCAATGATGC 000560 000561 TTCCTCAGCT TCAACATCCC AAATAATTTC TTGTAGGCTC AAAACCCATC TTTCTAATAA GTATGGGAAG AATTTCCTCC 000640 000641 ATTCTTCATT ATTCCCACAA ATACAGGAAG TACACAAGAG AGAAAAACCT TTCCAATGTA ATGAGTATGG CAAAGCCTTT 000720 000721 AATTATAGCT CACACTTAAG GAGACATCAC ATAACCCATT CAGGAGAGAA ATAATGTAAA TGTGATGTAT GTGGCAAAGT 000800 000801 CTTTCATGAG AAGTAATACC TTGCATGCCA CCATAGAGTT CATACTGGAG AGAAACCTTA CAAGTGTAAT GAGTGTAGCA 000880 000881 AGACCTTCAA TCAGAAGTCA TCCCTTCAAT GCTGTCATAG ACTTCATACT GGACAGAAAC CTTACAAATG AGAAGAATGT 000960 000961 GACAAAGTTT ACAGTTGCAG ATCACAACTT GAAACACATA GGAGAATTCA TACTGGAGAA AAACCATACA AATGTAAGGT 001040 001041 TTGTCACAAG GCTTTCTGGG ATAATTCATG CCTTTCACAC CTGAAGAGTT CATACTGGAG GGAAACCTTA TGAGTGTAAG 001120 001121 GTTTGTGACA AGGTTTTCTG GCATGATTCA TGCCTTGCAC AACATCAGAG AGTTCATACT GGGGAGAAAC CTTACAAGTG 001200 001201 TAATAAGTGT GGCAAGACCT TTGCTCAAAA TTCAGGTCTT GTAATGCATA AGGCATTTCA TAATGGAAAG AAACCTTACA 001280 001281 CATGTAATGA ATGTGGCAAG GTTTTTAGTC AAAAAGCAAA TCTTGTATGT CATTATAGAT GTCATACTGG AGAGAAACCA 001360 001361 TAGAAGTGTA ATGAGTGTGG CAAGACCTTC ACTTGAAATT CAGCCCTTGT AATTCATAAA GCAATTCATA CTGGAGACAA 001440 001441 ATCTTACAAG TATAATGACT GTGGCAAGGT TTCTtttttt tttctttttc tttttttttt ttttgagaca gagtctcact 001520 001521 ctgttgccca ggctggagtg cagtgacgcg atcttggctc actgcaacct ccacctccca ggttcatgcc attttcctgc 001600 001601 ctcagcctcc tgagtagctg ggactacagg tgcccaccaa cacgcctggc taattttttg tatttttggt agagacgggg 001680 001681 tttcaccatg ttgtccagga tggtctcgat ctcctgacct cgtgatccgc ctgcctcggc ctcccaaggt gctgggatta 001760 001761 caggcgtgag ccaccacacc cagccGAATG TGGCAAGGTG TCTAATCAAC AATCAAACCT TGCACAACAT CAGAGAGTTC 001840 001841 ATACTGGAGG GAAACCTTAC AAGTGTAATG AGTATGGCAA AGCCTTTAGT GGGCAGTCAA CACTTATTCA TCATCAAGCA 001920 001921 ATCCATGGTA TAGGGAAACT TTACAAATGT AATGATTCTT ACAAAGTCTT CAGTAACGCT ACAACCTTTG CAAAACATTA 002000 002001 GAGAATCCAT AATGAAGAGA GATCTTACAA GTGTAGTAAA TGTGGCAAAT TTTTCAGATA TCGATCATAC CTTGCAGTTG 002080 002081 ATTGGCGAAC TCATACTGGA GAGAAACCTT ACAAATGTGA TGATTGCGGC AAGGTCTTCA GTCAAGCTTC ATCTTATGCA 002160 002161 AAACATAGGA GAATTCATAC AGGAGAGAAA CCTCAAGTGT GATGATTGTG GCAGTCTTGA CTTCACTTTC ACACAGGATT 002240 002241 AAACATCAGA GAATCTATAC TGGACAGAAT CTTAAAAATG TCGTAAGTGT GGCAAGGTCT TCAGTCCGAG GTCAATCCTT 002320 002321 GCAGAACATC AGAAAATTCA T |
Predicted Small Protein
Name | NONHSAT097815_smProtein_1067:1243 |
Length | 59 |
Molecular weight | 6653.8823 |
Aromaticity | 0.0862068965517 |
Instability index | 55.6379310345 |
Isoelectric point | 10.612121582 |
Runs | 12 |
Runs residual | 0.0503031451307 |
Runs probability | 0.0374197727138 |
Amino acid sequence | MPFTPEEFILEGNLMSVRFVTRFSGMIHALHNIREFILGRNLTSVISVARPLLKIQVL |
Secondary structure | LLLLLLLEEELLLLEEEEEEEHHHHHHHHHHHHHHHHHLLLLLLEEEELLHHHLEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiii |