NONHSAT098882
Revision as of 01:09, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT098882 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
772 nt |
Genomic location |
chr4+:155666526..155670572 |
Exon number |
3 |
Exons |
155666526..155666660,155669341..155669540,155670136..155670572 |
Genome context |
|
Sequence |
000001 AAGGTAGGCT AAGTAAATAA GCAAATGGCA ACGTGCCTTG CAGGATATCT CGAAATGCTT AGAGAAAGGA TGTGGCAATG 000080
000081 CAGGACCGCT TCCAGAGATT CCAGAGCTGC CCAGTATTGC TGCAGAAGTC ATCAGcacgt agaagaatac agaggacttg 000160 000161 tgcatcaaac atctcagtta atcctcagaa caaTTTGAGT GTTCCCATTt gactacttga ggtgacatag ccaataagag 000240 000241 ctggagccag gactcagaca taggccatca tttctaagta aaattatttt tctaAGGAAA ACATTACACA TATTAGAAGG 000320 000321 ATGCATTCCT CAGGGTTTTG TGAGACTGTG AAGATAATTA TTCGTGATCA GAGAAGTGTT CTTGCTTCAG CAGTCTTGGG 000400 000401 ATTGGCGTCT ATAGTCTGTA CGGGCTTGGT ATCATACACT ACCCTTCCTG CAATTTTTAT TCCATTCTTC CTATGGATGG 000480 000481 CTGGCTAACT TCATACCCCC ATGTCAGTGT GTGTATTCTG TATGTAAATA TGTTTATATT TATAGAGCAT CAATCAATAT 000560 000561 AAGCATTATT GAGAAAAATG TGACCCGTAA CACTGTGTTC TGGATAAAAA TGTGATTAGG AATCACGCAA AGTGCTTACT 000640 000641 GTGTAAGCCC AAGAACAAAG GCTTTCTGAA TCTTCTCAGG CAGTTCAGAT TTAAAGCACC ATCCAAACCT TGGAAATACG 000720 000721 ACAGGGTGTG GTAGAATTCA GCAATATGAG AAAACCAGCC CCTAAAATGA TA |
Predicted Small Protein
Name | NONHSAT098882_smProtein_320:487 |
Length | 56 |
Molecular weight | 5933.0357 |
Aromaticity | 0.109090909091 |
Instability index | 51.7890909091 |
Isoelectric point | 7.83538818359 |
Runs | 11 |
Runs residual | 0.0484848484848 |
Runs probability | 0.0398821281175 |
Amino acid sequence | MHSSGFCETVKIIIRDQRSVLASAVLGLASIVCTGLVSYTTLPAIFIPFFLWMAG |
Secondary structure | LLLLLLHHHHHEELLLLHHHHHHHHHHHHHEEELLLEELLLLLHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTToooooooooo |