NONHSAT099291
Revision as of 01:10, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099291 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1417 nt |
Genomic location |
chr4+:174451694..174504613 |
Exon number |
3 |
Exons |
174451694..174452229,174457999..174458121,174503856..174504613 |
Genome context |
|
Sequence |
000001 CAGTATCACT CTGCTCTCTT TTCTGGTTGA AAAGAAAGAA AGAAAGAAAA CGCAGGTATT GCTTTTCGAA GTGCTTTGTA 000080
000081 GGTAATCGAG GTAAGAAAAT ATACGCAGGC AGCCTCTTAC AATTTTATGC AGGGGCGCCG GGAGCCTCGT GACGGGCGGT 000160 000161 GGGGGCCCCC ACAAAGGCGC GGCTGGGAGC TGGCGCTCTT TGCCCCAGCA GGGACGAGGA GCGGCTGGAG AAGGGTGTTT 000240 000241 CTTTGACCCG TTTACAGGCT CGAAACGCCG GTCTCAGTGG CTATTGAGTT ACCCACCAAG TTACCCCGGT TAGAGCTGTT 000320 000321 TGGGGTGGCT CACGTTATTG CGGCAAACTT TGGAGATGAC GGCTGAGTCC TCCGGGCGAA CATGTCAAGC CGATTGTAAA 000400 000401 TGCTGTTATT TCCACATCCT TCAGGGACAC CAGTCCCTAC GAAGACCTTG GGCGATTTTG AAGTGCGGGC ACCTCGATTC 000480 000481 CCCGAATCTG TAGTGTGGCT GGTATCGGTG TTCCCCTGGT TTAACTAGCC TGTTTGAAGG CACAGATCAT TCATGGGGAT 000560 000561 GTATAACCGA AACCAGTCCT CTCCACCGCC TGGGGATCTT CACTTTCGCA GTCTACGACT GCCTGTGACT CCAGAAAGAC 000640 000641 AAACTGCAGA TTGGCCAAGa tggggaaatt gaggcagaga agccaagaca tgtgctaaag gtcatgcagg ctatgaatgg 000720 000721 agctggaatg tgaacgcagg ccatatgacc ccagagccca tgttcttgaa cccttaGAAA GACAGCAGCA ACACACCTGG 000800 000801 TGCAGCAGCT GCTTAGTTGG AGTGGCTGAC AAGGTTGGCA GAGGATCCCG TTCCTCCCGT GGAGTGGCTG CCATGATACT 000880 000881 GCCTGCACTG AAGCTGCTCC TATTTCTGAA ATATGTATTG TTATTTTTTT CCCTGCATGT TGAACATTAT ACTCTTCTGT 000960 000961 TCTTTCGCAT TCTCTTCTTC CCTTCCGGAT GACTTCTAGG GTTTTTGTGA TTCTGTAATT CTAAAGGAGA AAGGATAATA 001040 001041 AGAATTGTGA ggccgggcgc ggtggctcat gcctgtaatc acagcacttt gggaggccaa ggtgggcgga tcactaggtg 001120 001121 aggagatgga gaccatcctg gctaacacgg tgaaaccccg tctctactaa aaatacaaaa aattagcggg gtgtggtggc 001200 001201 gggcgcctgt agtcccagca actcgggagg ctgaggcagg agaatggcgt gaacccggga agcggagctt gcagtgagcc 001280 001281 gagattgcgc cactgcactc cagcctgggc gaagagggag actccatctt aaaaaattaa aaaaaaaaaT tacagaaaat 001360 001361 tagctgggcg cggtggcggg cgcctatagt cccagctact cgggaggctg aggcagg |
Predicted Small Protein
Name | NONHSAT099291_smProtein_716:991 |
Length | 92 |
Molecular weight | 10536.3129 |
Aromaticity | 0.120879120879 |
Instability index | 55.3857142857 |
Isoelectric point | 8.98638916016 |
Runs | 14 |
Runs residual | 0.0203754578755 |
Runs probability | 0.0304337951397 |
Amino acid sequence | MELECERRPYDPRAHVLEPLERQQQHTWCSSCLVGVADKVGRGSRSSRGVAAMILPALKL LLFLKYVLLFFSLHVEHYTLLFFRILFFPSG |
Secondary structure | LEEEEELLLLLLLLLLLLHHHHHHLLEEEELLEEEEEELLLLLLLLHHHHHHHHHHHHHH HHHHHHHHHHHHHLHHHHHHHHHHHHELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHH HHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTT TTTTTTTTTTTTTTooooooooooooooooo |