NONHSAT099672
Revision as of 01:12, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099672 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1339 nt |
Genomic location |
chr4-:187543069..187544347 |
Exon number |
1 |
Exons |
187543069..187544347 |
Genome context |
|
Sequence |
000001 GCCTAGAGAA ACCCTGGGCC TCCACCCTGT TGCAGACTGA GGCACTGCCT TGGGGCTCGG ATGCAGAGCC AGTAAGACTT 000080
000081 AATGAAAAGC AGGCTGGATC TGGTCTCTAA AAAATGGCCG TGGATTTTTG GAAAATGTAT GAAAGGAAGG AAGTGAAGAC 000160 000161 TGTAGAGGAA GTGTTTCCTG TTAATGATGT GGAGAACAAA GTGCTTGGTG AATCCCTGGT GTGCAGCTCA CACTGAGCAG 000240 000241 TTCTGGTCTG TGAAATGCCA CACTCGTGGC AAACCTAGAG CAAGAATCTG AGAAAGCAGT TAAGTGGCAA GTGAGCTTTG 000320 000321 TTTTGGGTAA GTATAATAGT TCATTTGGGG AAAATAAATT CTGTGCTATG ACAGGGATGG TGAATTCTGG GTGCTTGTTC 000400 000401 ATGAAACAGA AAAAGGATGG GCTCGTGGAT GGATTAAACC TGAGAACCTG CAACGCCACC CTGATTTATC CAAAAGGGCT 000480 000481 GTAGAGAACT GCTTGTTTCT TTGAAGATTC AGTCGATGAT ACAAAATTAT ACAATATTCT GGAGTTGTGG TTGCAGCTAA 000560 000561 AGATACATAC AGTATAGCCT GAAAAGGTCC AAAGAAAAGG AGGTAAAACA CTCTATCTTT GAGCAGCCTC TCAGCTTCAG 000640 000641 CACTGCTGAC ATTTGGAACC AGATATTTTT GGTTGTGTAG GGCTGTCCTG TGCGTTGTAG GATGCTTAGC AACACCCCTG 000720 000721 GTCTCCACCC ACGAGACGCC AGGAGCACCC TCTTCCGACA AGTAGTGACA ACCAAAAATG TCTGCAGGCA TTACCAGATG 000800 000801 TCTCCTAGGG AGCAGAATTG CCCCCAGGGG AAAACCACTG ACCTAGAGGA TAAGTTGACC TGAAAAAGAT AAGAAGGGAA 000880 000881 TGTTGTTGCA ATCTTCAAAA CCTGTAAAGT GGGGTGGGTT ACACACATTT ATCCATGGAC AATTGTCTCT TGAAGCTTGA 000960 000961 TGTCAATTTC TTACTGAATC GAAATCTTTC GTAATGAATA CATATCTTAA GAATTTGTAA GTCATAACCG TTGAAAATAC 001040 001041 AAATGTGGTC CAGAAGTGTT TTGAGGGACT CCTGGAAAGT GACTCACTCA ACTGCTTTGT GGAAGGATAG CCTTGTCTTT 001120 001121 CCACCACACA TTCCCAGTGC AGCCGAGAGA GGGAGTTTTG GCTTCGCTAA GAGCAGAGTG CTGTTTCTTC TGTTTTTTGT 001200 001201 TTTTCATCAT TTATGGACAA AATTCTGTAA AGTATACCTG GTTTTAGGTG GATAAAAATA AAACAAGTTG AAGGTTCCAA 001280 001281 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT099672_smProtein_701:862 |
Length | 54 |
Molecular weight | 6100.8604 |
Aromaticity | 0.0377358490566 |
Instability index | 51.4132075472 |
Isoelectric point | 9.29937744141 |
Runs | 7 |
Runs residual | 0.0281868384722 |
Runs probability | 0.0397960986196 |
Amino acid sequence | MLSNTPGLHPRDARSTLFRQVVTTKNVCRHYQMSPREQNCPQGKTTDLEDKLT |
Secondary structure | LLLLLLLLLLLLLLLLEEEEEEEELLEEEEEEELLLLLLLLLLLLLLHHHLLL |
PRMN | - |
PiMo | - |