NONHSAT099694
Revision as of 01:12, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099694 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1174 nt |
Genomic location |
chr4+:188329695..188337128 |
Exon number |
3 |
Exons |
188329695..188330053,188334716..188334865,188336464..188337128 |
Genome context |
|
Sequence |
000001 aaacccaggg ccctggtggt gtaggcaccc cagggaatat cctggtctgc cggttgcaaa gaccgtggga aaagcgtagt 000080
000081 atctgggccg aatgcaccgt ccctcagggc acagtccctc atggcttccc ttggctggcg gagggacttc tctgacccct 000160 000161 tgcgcttcct ggatgaggca acaccccacc ctgctttggc ttgccctcca tgtgctgcac gcactgtcta accagtctca 000240 000241 gtgagatgag ccaggtacct cagttggaaa tgcagaaatc acccaccttc tgcattgatc tcgctgggaa ctgcagactg 000320 000321 aagcggttcc tatttggcca ccttgccagc cCATCTCGAA CATCATCTAA AAGGACTGGA CCTACATCTG CAGTTAACTG 000400 000401 CACAATGGAA GAAACGGCCT CTCCTGGGCA GCCTCATGGA TGGGGTGAAG AGACAAAGCT TGGGAGTGTA GCATGTTGAG 000480 000481 CACATCTGCT Cagaggtaac atttaagcaT TTAGGTTGTC TCCAAGCATA AAAATGGAAA TACTGATCCT GTGACAACAC 000560 000561 AGCCTGAATT TTCTGCTTTG CAGATGCCAG ATTTATTTTT AAATGGTGTG AATCAAATCT GTGCTGAGAG GCCAACTTCA 000640 000641 AAATATAAAA GAAAAATTGG CAATGGGAGG ATTGTGCTGG TTTGGCTGAA ATGAAGTGCT CTACGGCATT TCATTCTAGT 000720 000721 GGAGCGTCTG ACTGTGAAAA TCCTTCCAAT TGTAATTTTC TTTGGCTTGT CAAAAGAGGA TTATGAACTA AAGTCAGTGT 000800 000801 TGCAGGAAAT GTCACCTGTC CTTTGAAAGA AAATAATAAA TCAAAATGGC TTTTGTTCAT CATGTTTAAA ATGAAAAAAA 000880 000881 AAAAAAAGTT GATCCACTTG GAGTCTTCTC TCATTTCTTG ACAAGGCAGT TAAATAAATA AAACGGAATT TTTTGTAATT 000960 000961 GTTACTTCTT GCTCATCTCA AAAGGGGAAA AGGGAAATCT TCATTCAATA CATATTCATA CAGAGAAAAT AGAAGAGCAG 001040 001041 AGACAGAGAC AGAAAGAGAA ATGAGATGAA GAGTGAAACA AGACCCTGGT AGAGTTCCTC AAGTCAGATG TTAAGAAAGG 001120 001121 TATCTTTAAA TTATAATTTG TTTCTTTGAT AGATACTATA TTACAAATTC AAAA |
Predicted Small Protein
Name | NONHSAT099694_smProtein_209:478 |
Length | 90 |
Molecular weight | 9592.9108 |
Aromaticity | 0.0449438202247 |
Instability index | 69.4651685393 |
Isoelectric point | 7.59283447266 |
Runs | 17 |
Runs residual | 0.0478078871998 |
Runs probability | 0.0362282697923 |
Amino acid sequence | MCCTHCLTSLSEMSQVPQLEMQKSPTFCIDLAGNCRLKRFLFGHLASPSRTSSKRTGPTS AVNCTMEETASPGQPHGWGEETKLGSVAC |
Secondary structure | LEEEELLLLHHHLLLLLLLLLLLLLEEEEELLLLLLHHHHHHHLLLLLLLLLLLLLLLLL LEELLEEEELLLLLLLLLLLEEEELEELL |
PRMN | - |
PiMo | - |