NONHSAT099839
Revision as of 01:12, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099839 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
916 nt |
Genomic location |
chr5-:188482..191867 |
Exon number |
3 |
Exons |
188482..189155,189488..189641,191780..191867 |
Genome context |
|
Sequence |
000001 CACCAGGACC CAGCAGCGCT CCCAGCCGGA ACTCCTCCAG GGGCCAGCGC CCCAGCACCG CGCGCGTCAC CTCCGCCTGC 000080
000081 TCCAGCAGAC CTAACTCAAG TGCTGTCCTG CTAACTACAT GGGACCTGCT GAAACCGAAA TGAACCGAGA TTCCAGTTCT 000160 000161 GTGCAGAGAT GGCTGGACCT GCGTTGGGGA CATGCCTGGA CCACCCAGCC CACTGGCCTT CACTGGTCTG AAAGGTTGTG 000240 000241 AGGCCCGTGC ACAAGTCTGG CTCTCGAGGA CTGGGGCACT CCCTGGAGGA CCCACCTCCA TCCCAGCTGT CAGAAGAAAA 000320 000321 ACTGCTGTTA CTCACGTCGC ACGGGCCTCT CCCTAGGACC CGCTGGCCCC TCAAAGCTGT GACAGCACAG ACGTGGCCTG 000400 000401 GCACCCAGCA AGGCCTCTGA CACCTGATAC ACACGGTGGG GCCAGGCCGG ATGGAGAGCA TCGCTGAGCC TGCCTCTGGT 000480 000481 TCCAAAGCTC GGGAGGCTCC TCTGCGAGGC CACCTTGTGG TGCAGAGTGG ATCTGCAGCT TGAGGGGAGC TCCAGGTCCC 000560 000561 AGCCAGACGG GGCGTGGACT CGGCGGCAGC TCCACCCAGC TGGTGTCATG GGCGTTCTGT GGGCAACAGG GTTTGGACCC 000640 000641 TAAAAGTGCC GGTTCTGTCT GCTGCTCTGA TCCGGAACAA GAGCGTCTGT CTCGTAGCAG CTACATGTGT GACACAAAAG 000720 000721 CTCTCGTCAT TTCACACGCG GTGTGGAAAA CATTCTCTAT GTCACAGGCA CACAGAACCC ACATTCACCT ATCGTTTTGT 000800 000801 AATTAAATCT TGGACCTACG CCCCAGGTGG TCAGTTCGGG CTCAGCCAAG GTGCTAATCC CCCAGGGATG GTGGGAGCAG 000880 000881 CCTGGACCCT GGCCGTTTTC TTCTCCTGGG TCTCAG |
Predicted Small Protein
Name | NONHSAT099839_smProtein_191:355 |
Length | 55 |
Molecular weight | 5521.3868 |
Aromaticity | 0.037037037037 |
Instability index | 55.8740740741 |
Isoelectric point | 11.8348999023 |
Runs | 8 |
Runs residual | 0.0145438121048 |
Runs probability | 0.013690160749 |
Amino acid sequence | MPGPPSPLAFTGLKGCEARAQVWLSRTGALPGGPTSIPAVRRKTAVTHVARASP |
Secondary structure | LLLLLLLLLLLLLLLLLLLLEEHHHHLLLLLLLLLLLLLLEELEEEEEEEELLL |
PRMN | - |
PiMo | - |