NONHSAT100137
Revision as of 01:13, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT100137 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4986 nt |
Genomic location |
chr5-:4520770..4525738 |
Exon number |
1 |
Exons |
4520770..4525738 |
Genome context |
|
Sequence |
000001 AGAAATATTA AAAATGATAT ATAAATAAAT AGCAATTGAA GGTCATTCAG CTCTCCAGGC ATTCTGCTCA GTAAACAGCC 000080
000081 TCTGTGTACC TTCTGAAACA TTGCATTGCA ATGTTGAATG AAGGGCTCAG ATAATCTCAA CATTTGTCTC CAAAATATTC 000160 000161 CTTTTTAAAT CCGTCATGCA TGGATTTACG GAATGAATCA CTCACAGCCT TTGCTGGTCC TGAAGGTCTG GAGCCCTCAC 000240 000241 CATGTCTTGG GGAGAATGGA GTTTCACCTC CCAAATGCCT GCTGTCATGG GGGAGCTGCT CCTCATTTAG TGGAAAACAG 000320 000321 GTCTTTCCCA CCTCCAGGGC TGCCTTTGCC TTCACCATTC CCTTATTCTT TTACTTCTTG GCTTGGTCAT TGTGTAAGCT 000400 000401 TTGATTATAT CATTGTTCAG TGTTTAAATT TAATAGGAAA GGTTTCTAAT ATCTTTAGCC TGGTCTCAGA CATAGCCTCA 000480 000481 ACTTTCTGAT TCTCCGGTGG AACTGCAGTT TTATGAGCCA GGTACTGCCA CTGTCTCTCA TTCACAACGG AAGGCTTGAG 000560 000561 GCTGAGTGGA ACGAATATGG TCATACCACT TAAGAAGTGG AGCCAGGAAG CAAGCCCCAT CAGCAGGACC CAGGAGTCAA 000640 000641 TATGTTCTGC ATTGCTGAAG TTGAGAGCAA TATTGTGCCC ATCTCTGAAA CAGAGATAAA ATAATGCTAC AGTTGGATCA 000720 000721 GAAAAGAAAA ATGAAAAAAA TAAAAGCTTT GAGGAAGAAC TTTGATGGAA GAAACTATTT CCATGACCCT TTTCCTCTCT 000800 000801 GTCTACAATG GCATCACCTT CTTGGTGAAG GGACATTGAG ATGCTACGGC TGAGAATGCA GAGTGAAGAG CCCTTGGAGG 000880 000881 CCCTACCAGC TGCTACCAGC CTCCTGTCTT CCCTGCCTGG GTCCATGGCT GGCCTGCCCT GGCATCCATG TGGCTTCTGG 000960 000961 ACTGAGTTCC AGCTGGTGAG ATGCGAGGGG AAGCTGCACC TGCTGCACCC AGACCTGGCT CATACAACCT TGCACAGGCG 001040 001041 ACCTCGGGGG GTTTTCCTTC TGTGGACGGA CAGCCCAACA AGCTTGGAGC CCATAAGCTG AGGGTGAAGA GTCTCTGAAT 001120 001121 TGCTGCTTGG AGAACAGCCT GCTGCCAGCT AGGATTGCCT GGTTTGGATT TTATCTGAGA GAGAAATAAA CTGCTTTTAT 001200 001201 TGTGTTGGAC CCATTGGGCA TTTTGAGCTG ATCAACTAAT ATTACTAACT CCTTTAGTTA TATGTCCTTC CTTTTAAAAG 001280 001281 GTCTATGAAA GATGATTTAA AAATACATTC ATGTTGCATG TTAAAGTATA TTTCAAATAA TTGAGAAACT CTAAGTAGGA 001360 001361 TAAGAATAAA GTTAGGAAAT GAGGATGGAG CCAGGAATGA AGCTGTTCTG AAATGGGGGG AACATGAAGC CCCATTCTCT 001440 001441 GGCTTAGGGG ACAAGTTTGA ATCCAAACTA GAAACGGAGG ACAGGAAAAG GGAAATAGAA TCAATGGCAG AAGAAAAACA 001520 001521 CAAGTAGAAA TAATATCAGT GATGGCATTG CATCTGTCAT CTGGACTGAA GCATTTATTT ACTGTGAGAA ACCCTTTAGG 001600 001601 AATCTATTTT CATCCTTTTA TGTAGATAAA GACATCGATA TAGTTGACAT CAATACAGAT CAAACATAGA CAGTGATCTA 001680 001681 GTTATAGACA CAGACCTAGA CTTAGACATG GGTTTAGATA CAGCTTAGAA ATGCCTTTAT TTCCCACTCT CCTCTCAGCC 001760 001761 TCCACCGGTG TGTGAAATTG TCCAATCAGA GTCTCCTTTT GAGTCATCCA TGGACGACTA CTCATTAGCT AACTCATCTG 001840 001841 GCCTCTTTCT TCCTCTAACC TTTTCTTCCC TTTTCTCTGT GCCTCTTCGC CTGCCCCAAC TTAGTCCTGA GCATCTGTGA 001920 001921 CCTCCTGCTC ACTGTGCATG CCTGCAGCTC TGACTCCTGT CCCGCAAAGT TTCTTGTTCT TCAAATCTTA TTCTGGGTCA 002000 002001 CTCCTGTTTT TCTCAAGGAT GCCTGTGGCT TTATCTCCCT TTCCTTAATG ATGCACCTCA AACCTCCGTC TCCCCCTGAA 002080 002081 ATGCCTCCTC ATTTACCTAA CAGGCTGGTG ACTGTCCCCT CTGGTGCCTG ACCTAGGAAA CTGACACATC CCACATTCGG 002160 002161 AACAAAGGCT GTGCCCTCCT CGACAGTCCT CTACCTGGGG TCTCACTGCA TTGCCATTGT TTCAGGGCTG CTTCCCAAGC 002240 002241 CAGAGAAGTA GCAGCCATCC TGGATCGATT CCTTCCTCTC CCCACAGATT CCATCAGTCC ACAGTGCTGC TGACTTTGCT 002320 002321 TTCTGCACGT TTCTTAGATT TCCCACTTCT CGCCATCACC ACCCTGGGAG CCACCTGCAA AGTACTGGCC TGGTCACCAT 002400 002401 CGCCTCTCGC CAGCTTACAG CAGGTGTCCC CTATCCAGCC CACCTTCCTC CAGTCTTGCT CCAGTTCAGT AACTTATTCT 002480 002481 AGCATCTTTA GTAAGTCATG TGCTGGGGCT GACGTGCCTC TACATGGCTC CTCCTTCTTG TCTTCCTCTC CTTTGCTAGC 002560 002561 ATTACTGACA TAGCCTGCAT GTCCCTTTGT GCCAGGAACC GTTTAAGGTG ATTTTCTGCT ATTATCCCAT TTAATCCTCA 002640 002641 ATATAGCTCT CTGAAGAAGG TAGCCTAGTC ACCCTCCTAG GATGGCGAGG CAACCAAGAC TGTGTAGTGC CTTCCCCTTG 002720 002721 CACGCATAAG GTCACCTGCA CATTGTTCTC TGCTTGTGGC ATTATTTCCT CCAGCTTCAC AGGGAGAATC TCAACCCATC 002800 002801 TTTCATCCCT AATTATGGAC ACCATCTGCT CAACAAAGGC ATATGGTGCT CCTCCATCTG CCCAGAGAGT TGCTGAGCCT 002880 002881 CTGTACATCA ACAGCCTTTA GCTGCCTCTA CGCCGTGATT GGGAGGAAGC TCCCTGAGGA CAGGGCCATA TCTGACATTT 002960 002961 CCTCAGTTAC ATTTTCCACA CTGAGCATAA TATGGTCACA TAGGGGGCAC TTATTAAATA CTTCCCTAAA ACATGAGTAA 003040 003041 ACATGACATC AAAAAGGTAT CACTCACTGC AAGGAAAATA TAGCTTATGA CATTTTACAA ATGTATGAAA ATTTAAATGT 003120 003121 ATTTTTTGTT CATGAATAGT CACTGTGGTG CACGTAATAT ATTTAACCAG GAGTATGTGG CTTAGTGAGT TAATGCAAGT 003200 003201 GAGAAATATG TACCCACATG AAACACCTCA TATATGAAGT TTTTTTTTTT TTGACAGAGT TTTGCTCGGT CACTCACGGC 003280 003281 AACCTCCGCC TCCTGGGTTC AAGCAGTTCT CCTGCCTCAG TCTCCCGAGT AGCTGGGACT CTACAGGCAT CCCCCATCAG 003360 003361 GTATGGCTAG TTTTTTCTTT TTTTGTATTT TTAGTAGAGA TAGGGCTCTG TCATGTTGAC CAAGCTGTTC TTGAACTCTT 003440 003441 GATTTCAGTT GATCTGTCTG CCTTAGCCTC CCAAAGTGCT GGGATTATGA GTGTAAGCCA CCATGCTCAG CCCTCATATA 003520 003521 TGAAGCTTTG AGTGCTATGT ATAGGGATTC AGACTTTATA GGCTGCCACT TTCATGATAG ATTTACATTG CACCCTACTG 003600 003601 TTAATCTCTA CATTTTTAAT TTTAAATTCT TAAGGATCAT CTTGTCTTAT CTTCATTCTA GTTAGTTTTT TCTTAAAATA 003680 003681 AAAACTAACA AATAAAAAAC AAACAAATAA AAAACAGGCT AGACAAGTTA AATGATCTGC TTTAGCCCGA ATACTGGCAT 003760 003761 AGAAGTAACC AGAAATGCTC TTACTCCTAA TACATACATA CATATGTCCA TATACATATG TTTCTTATTA TCCATATAAG 003840 003841 TGCATTTTGA TTTTGGACAT AAAACAAAGG ACTACATGAA CGAATATATT TGTATTATTA TATAAGCAAT ATGAGCTTAC 003920 003921 TGAAGAATAT CTAAAAATAT TGAAACAGTT TAACAAAATA ATATTCATAA TTCTATTACC TAGCAGTAAC TCCTGTAAAT 004000 004001 ATTTTAGGAT ATTTCATGCT TGTTCTTTTA TTATCAATAT ATTTTCCTAT TTGATATTTT TGCAACTTGA GTGCAAAATT 004080 004081 TTCACTTAAT ATTATAATTA TTATTTCCCA GTTTATTAAC TATTATTTTA AACATACTTT TATGTTTGTG TACTCTTCTA 004160 004161 TCACATGTGG TTATTTTCAT TAACAAACCA TCTATAATTT TAGATGTCTA TCAGCACTAA CATGGGTTAT TGTTGCTGTT 004240 004241 ATATTTAATA TAATTTCCTC AGGATCAATT TATATATTGT AAGCACTATG TCAAATTCCC AAATATCTTG AATTTCTTTG 004320 004321 TGTGAGTTGA TTTTTCAAAT GATTGTACCG GTTTACAAAA GCAGAGTTTA AGAGGATTCA TCCCATATCA TAAATAAATA 004400 004401 GTGGTTTCAT GATATGTTCT ATAAATGTAT TTTGGGAAAG TTTAAAGTCG TTTAACTATG GTCATATCCT ACATCCTAGA 004480 004481 TGTTGTTCTG TTGGGTTTCA TTTAACCAGT CTCAACAAAT GATACAGAAT ATTTCCTAAA GAACTTATAA TCCAATAAAT 004560 004561 GACTTTTTGA TGCCTCATGG AGAAAATTGG CTTTGAGACC ACACTTCTTC CCACTTCTTC AATATAAAAG AAAAACAAGT 004640 004641 TCTTATTAAC ACAATTTTGG ACACTCAAGC ACATTCTATG GTTCTGTATT GGTGATGAAA ACTGCCTATG AGCGACTACC 004720 004721 AACCTCTTTT ATGCTGCCTA TTTTTGGAGA TGTCCAAATT TAAGATTAAG GATTCTGGAA ATTTGTTTCA CATATTCTCT 004800 004801 TTCTCTTTCT CTCAAGGTTA GGGTACCCAG TGTCTTCCAA ACTAAAGTAT TGTAATATTA CCCTGCCACC TAGGGGTATT 004880 004881 GCCAAAGAAA TTTATGCATG TATATAGACA TTTAGTGTAT TGGTCAAAAT GTGACAATTA TGTTATTAAA GTATGTAATT 004960 004961 AACAGTCAAA AAAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT100137_smProtein_179:403 |
Length | 75 |
Molecular weight | 8025.1943 |
Aromaticity | 0.148648648649 |
Instability index | 54.6163513514 |
Isoelectric point | 6.06121826172 |
Runs | 7 |
Runs residual | 0.0480553724456 |
Runs probability | 0.0112044817927 |
Amino acid sequence | MDLRNESLTAFAGPEGLEPSPCLGENGVSPPKCLLSWGSCSSFSGKQVFPTSRAAFAFTI PLFFYFLAWSLCKL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLEELLLHHHHHHHHH HHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHH HHHHHHHHHHHLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTT TTTTTTTTTTTiii |