NONHSAT101357
Revision as of 01:18, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT101357 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2753 nt |
Genomic location |
chr5+:45212601..45217161 |
Exon number |
2 |
Exons |
45212601..45212751,45214560..45217161 |
Genome context |
|
Sequence |
000001 gagactgccc ttgaacaact ttggaaggca ctataccaag ttcttcttac cacccataca gcaataaaac ttcacggctt 000080
000081 ggatccactc ctttcagccc aggagggccc ctccagactc ttgggactgt atactcacca gaggtctcaa gatttgcctc 000160 000161 aggtgttttt tATTTTTTAT TTCTTTATAG caaaaggcag aaaaattcga agacagaaat aggaagaaca agggcaacaa 000240 000241 gaagaaaaga gtaactaata taatggatat taatccaact acatcaataa ttttaaacaa cagtggacta aatgcaccaa 000320 000321 ttaaaagaca gaaattgtca aagtggaaca aaatccacaa atcagtaact gtaggttgtt tataagaaac ccactttaaa 000400 000401 tgtaaatgca catagagatt aaaagtaaag gaatggagaa atgtatacca tggcaaagct aataaaaaga gaacaagagg 000480 000481 agcaatatta gttattagag ataaagagga gccttacata ctcataaaga agtcaattct acataagaca taaaaatcct 000560 000561 caatgtaaat tcacctaaca acagagcatc aaaatatatg aagcaaaaac tgatagaact gcaggaataa ataaattaac 000640 000641 ccactattat agttggagac ttcaatgcct ctctctcaga aatggacaga tccaagaaat gatgaagggc atagttgaac 000720 000721 tcatcatcat catcatcatc aattaactgt atataatggg catctattgt ctactcaatc caataacagc agaatacgtg 000800 000801 ttagtctcaa gcccacatgg aacattcacc aagatagacc acattccagg ccataaaata catttaacaa atttaataga 000880 000881 atagaaatta tacagtctct gctctcagac aacaatgaaa ttaaactaga aatcaataat aaaaagatat cttaaaatgc 000960 000961 caaaatattg gcgaataaac aacactctta taaataacat atagatcaag gaataaatct ccagagaaat ttaaacatct 001040 001041 tttgagcaaa ttaaacatga aaacacaact tatcaaaatt tttgggatgt ggggaaagta gtacctagaa ggaaatttat 001120 001121 agcatggaat acatatatta gaaaagaaga aagatctaaa atcaatcttc taaacttcca ccttaggaaa atatacaggg 001200 001201 aagaacaaat taaatccaaa gtaatcagaa gaaaggaaat aaggagaata agaaatcaat gaaatagaaa atagacaatt 001280 001281 aatagagaaa atcaataaaa ccaaaggtgg ttcttcaaaa aaattaataa aattgataag cctcttgcta ggctaactaa 001360 001361 ttttaaaagg gaaggcacaa atttctaata tcagaagtga gagaagaaat atcattatac acctcatgta cattaaaatg 001440 001441 gttataatac tatgtacaac ttatgcccac aaatttgata atctacatga aatgaacgaa tttttttgaa agacataata 001520 001521 tgctacaact cataagacca tctgaatagg cctatattta tgaaataaat ttaatcaata attaataacc ttcctaaaga 001600 001601 gaaagcacca ggcccagata agttcactgg tgaactgtgc caaacattta aggaagaaat cataccaatt tgctataatg 001680 001681 tctttcagaa tatagaagac aaaagaatgc ttcctgcctc attctactaa gctaacatta ccttaatacc aaaactatac 001760 001761 aaagaaatta aaagaaagga gaactacaga ctgatatctt tcataaacac aggtgcaaaa atcctcaaaa aattagcaaa 001840 001841 tccatgccaa caatttataa taattatatg ccacagccaa gtggaattta tcccaggtat gcaaagctag ctcaacatta 001920 001921 aaaaataaat taatgtaatt cattacatca acaggctaaa gaggaaaaat cacatgatca tatttaattg atgcagaaat 002000 002001 tacatttgga aaaaaaatcc aacacctaat cataacaaaa actctcagct agctaagaat agagaggaac ttccttaacc 002080 002081 tgaccaaaaa gtatctacaa aaagcctaca gctaatatta tacttaaggg tgagaaacta gaaactttcc cactaaggtc 002160 002161 aagaacaaga caaggctgtt gcctcttagc agccctttta aattagctaa tggtagtaaa accacaggct gccaactgat 002240 002241 tggtactagg atgcctagta ctaggatgcc tagtactagg catcctagct aatgagataa aataagaaaa gaacataaaa 002320 002321 ggtatacgaa ttgggaaaga ggaagtaaaa ttatctttgt tcacagagga agtgataatc tatgtagaaa atccaaaaga 002400 002401 ataaattttt taaaaatcct ggaactaata atcatagcaa gatagcaaaa tatatgatta atatacaaag tttagtcacc 002480 002481 ttcctatata cgagcaatga acaaacagaa tttcaaatta aaaatattaa tactggcctg gcgcggtggc tcatgcctgt 002560 002561 aatcccagca ctcaatccca gcactttggg agaccgaggt gggcaaatca ggaagttagg agatcaagac catcctggcc 002640 002641 aacacggtga aaccctgtct ctactaaact acaaaaaatt tgccgggcat aatggtgcat gcctgtagtc ctagctactc 002720 002721 agagactgaa gcaggagaat cgcttgatcc cag |
Predicted Small Protein
Name | NONHSAT101357_smProtein_2453:2707 |
Length | 85 |
Molecular weight | 9293.4976 |
Aromaticity | 0.0714285714286 |
Instability index | 52.1976190476 |
Isoelectric point | 7.94818115234 |
Runs | 9 |
Runs residual | 0.0268425841674 |
Runs probability | 0.0342597499461 |
Amino acid sequence | MINIQSLVTFLYTSNEQTEFQIKNINTGLARWLMPVIPALNPSTLGDRGGQIRKLGDQDH PGQHGETLSLLNYKKFAGHNGACL |
Secondary structure | LEEEEEEEEEEELLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLEEELLLLLL LLLLHHHHHHHHHHHHLLLLLLLL |
PRMN | - |
PiMo | - |